Gene Information

Name : A225_3801 (A225_3801)
Accession : YP_006499494.1
Strain : Klebsiella oxytoca E718
Genome accession: NC_018106
Putative virulence/resistance : Virulence
Product : type 1 fimbriae anchoring protein FimD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3993173 - 3995755 bp
Length : 2583 bp
Strand : +
Note : -

DNA sequence :
ATGACTCCAGGATCTGCTCGCGTATTCGCGCAGATCCCCCTTGCCCTTTTACTTTCCTCACCGGCTTTTTACGCGCAGGC
GGAGCTCTATTTCAACCCACGCTTTCTGGCGGACGATCCCGCCGCCGTGGCGGATCTGTCCGGTTTTGAAAAGGGCCAGG
AGCTGCCGCCGGGTACCTATCGCGCGGATATCTACCTGAATGACGGGTATATGACCACCCGCGATATCACCTTTAATGCC
GCTGAAAAGGGCCACGGACTGGCCCCCTGCCTGACCCGCGGACAGCTGGCCAGCATGGGCGTGAATACCGCGGCCATTGC
CGGAATCGACGTGCTGGCGGCGGATGCCTGCGTACCGCTAACCGAGATGATCAAAGACGCCACCACCCGCTTTGATGCCG
GGCAGCAGCGGCTGTATCTGACCGTGCCCCAGGCGTTTATGGGCAACCGCGCCCGCGGCTATATTCCGCCTGAGCTCTGG
GACCACGGAATTAACGCCGGGCTACTGAACTACAACTTCACCGGCAACAACGTGCACAACGACGTCGGCGGCAGCAGCAA
CTACGCGTACCTGAACCTGCAGAGCGGGCTGAACCTCGGCGCCTGGCGCCTGCGCGACAACACCACCTGGAGCTACAGCA
GCAGCGGCAGTTCGACGACCAATGAAAACAAATGGCAGCATATCAACTCGTGGCTTGAGCGTGATATTACGCTACTGCGT
TCGCGCCTCACGCTGGGCGACAGCTACACCAACGGCGACGTCTTTGACGGCATTAACTTCCGCGGCGCGCAGCTAGCTTC
CGACGACAATATGCTGCCGGACAGCCAGAAGGGTTTCGCCCCGGTCATTCACGGGATTGCCCGCGGCACGGCTCAGGTAT
CGGTCAAACAGAACGGCTATGAGATCTACCAGAGCACGGTGCCGCCCGGCCCGTTTACCATCAACGATCTCTACGCCGCG
GGCAACGGCGGCGACCTGCAGGTGACCATCAAAGAGGCCGACGGCAGCAGCCAGGTGTTCACCGTCCCCTACTCGTCCGT
TCCGGTGCTCCAGCGCGAGGGCCATACCCGCTATGCCGCTACCGCCGGTGAGTACCGCAGCGGCAGCAATCAGCAGGAGA
AACCGAAGTTCTTCCAGGGCACCCTGCTGCACGGCCTCCCGGCGGGCTGGACGCTGTACGGCGGCACCCAGCTGGCGGAC
CGCTACCGCGCCTTTAACCTCGGTGTGGGAAAAAACATGGGGGATCTGGGGGCACTGTCGCTGGATATCACCCAGGCTAA
CGCCACCCTGCCCGATGACAGCGAGCATCAGGGGCAGTCGGTGCGCTTCCTCTATAACAAGTCGCTGACGGATACCGGCA
CCAACATTCAGCTGGTGGGCTACCGCTACTCGACGCGCGGCTACTTCAGCTTCGCCGATACCACCTACAGCCGGATGAGC
GGCTACAACGTCGAGACCCAGGACGGGGTGATTGAAGTGAAGCCAAAATTCACCGACTACTACAACCTCGCTTACAACAA
GCGCGGCAAAGTGCAGCTTAGCGTCACCCAGCAGCTGGGGCGCACCGCCACGCTCTACCTGAGCGGCAGCCACCAGACCT
ACTGGGGCACCGGCAAGGCCGATCAGCAGCTCCAGGCAGGACTCAACGCCGCCATCGACGATATCAACTGGACGCTCAGC
TACAGCCTGACCAAAAACGCCTGGCAGCAGGGGCGCGACCAGATGCTGGCGGTCAACGTCAATATTCCGTTCAGCCACTG
GCTGCGTTCCGACAGCAAGTCGGCCTGGCGGCACGCCAGCGCCAGCTACAGCATGTCCAACGATCTGAACGGCAGAACCA
CCAGCCTCGCCGGGCTGTACGGCACGCTGCTGGAGGACAACAACCTGAGCTACAGCATGCAGACCGGCTACGCCGGTGGC
GGTGAGGGCAACAGCGGAGGCACCGGCTACGCGGCGCTGAACTACCGCGGCGGCTACGGCAACGCCAACGTCGGCTACAG
CCGCAGCGACGGCATCAAACAGCTGTACTACGGCCTGAGCGGCGGCGTGCTGGCCCACGCCGACGGCGTCACCCTGAGCC
AGCCGATGAACGACACGGTGGTGCTGATCAAAGCCCCCGGCGCAGACAACGTCAAAGTGGAAAACCAGACCGGGGTTCAG
ACCGACTGGCGCGGCTACGCCGTGCTGCCCTACGCCACCGAATACCGGGAAAACCGGGTGGCGCTGGACACCAACAGCCT
GGCCGATAACGTCGACCTGGACGATGCGGTGGCCAGCGTGGTGCCGACCCACGGCGCCATTGTCCGCGCGGAATTTAAGG
CCCACGTCGGGCTCAAGCTGCTGATGTCGCTCATCTACAACGGTAAGCCGGTTCCCTTCGGCGCGCTGGTGACTTCTGAC
GGCAGCCAGGCCAGCAGCATCGTCGCCGATAACGGCCAGGTCTACCTGAGCGGGATGCCCCTGGCGGGCAAAGTGCGGGC
GAAATGGGGCGAAGGTCCGAACGCCAGCTGCGAGGCTGACTACAGCCTGCCGCCGGAAAAACAGAACCAGATGCTGATCC
CGCTGTCCGCCGAGTGCCGCTAA

Protein sequence :
MTPGSARVFAQIPLALLLSSPAFYAQAELYFNPRFLADDPAAVADLSGFEKGQELPPGTYRADIYLNDGYMTTRDITFNA
AEKGHGLAPCLTRGQLASMGVNTAAIAGIDVLAADACVPLTEMIKDATTRFDAGQQRLYLTVPQAFMGNRARGYIPPELW
DHGINAGLLNYNFTGNNVHNDVGGSSNYAYLNLQSGLNLGAWRLRDNTTWSYSSSGSSTTNENKWQHINSWLERDITLLR
SRLTLGDSYTNGDVFDGINFRGAQLASDDNMLPDSQKGFAPVIHGIARGTAQVSVKQNGYEIYQSTVPPGPFTINDLYAA
GNGGDLQVTIKEADGSSQVFTVPYSSVPVLQREGHTRYAATAGEYRSGSNQQEKPKFFQGTLLHGLPAGWTLYGGTQLAD
RYRAFNLGVGKNMGDLGALSLDITQANATLPDDSEHQGQSVRFLYNKSLTDTGTNIQLVGYRYSTRGYFSFADTTYSRMS
GYNVETQDGVIEVKPKFTDYYNLAYNKRGKVQLSVTQQLGRTATLYLSGSHQTYWGTGKADQQLQAGLNAAIDDINWTLS
YSLTKNAWQQGRDQMLAVNVNIPFSHWLRSDSKSAWRHASASYSMSNDLNGRTTSLAGLYGTLLEDNNLSYSMQTGYAGG
GEGNSGGTGYAALNYRGGYGNANVGYSRSDGIKQLYYGLSGGVLAHADGVTLSQPMNDTVVLIKAPGADNVKVENQTGVQ
TDWRGYAVLPYATEYRENRVALDTNSLADNVDLDDAVASVVPTHGAIVRAEFKAHVGLKLLMSLIYNGKPVPFGALVTSD
GSQASSIVADNGQVYLSGMPLAGKVRAKWGEGPNASCEADYSLPPEKQNQMLIPLSAECR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
fim2D AFH78429.1 putative fimbrial usher protein Virulence KpGI-5 Protein 0.0 82
sfaF CAC16953.2 SfaF protein Virulence PAI III 536 Protein 0.0 66

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A225_3801 YP_006499494.1 type 1 fimbriae anchoring protein FimD VFG0876 Protein 0.0 82
A225_3801 YP_006499494.1 type 1 fimbriae anchoring protein FimD VFG1645 Protein 0.0 66
A225_3801 YP_006499494.1 type 1 fimbriae anchoring protein FimD VFG0912 Protein 0.0 66
A225_3801 YP_006499494.1 type 1 fimbriae anchoring protein FimD VFG0446 Protein 3e-174 48
A225_3801 YP_006499494.1 type 1 fimbriae anchoring protein FimD VFG0454 Protein 3e-156 44