Gene Information

Name : PADK2_03530 (PADK2_03530)
Accession : YP_006480701.1
Strain : Pseudomonas aeruginosa DK2
Genome accession: NC_018080
Putative virulence/resistance : Virulence
Product : pyochelin biosynthesis protein PchD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 748847 - 750490 bp
Length : 1644 bp
Strand : -
Note : COG1021 Peptide arylation enzymes

DNA sequence : 
ATGACTTCCTCGCCCGTCACCCCATCGGCCGTCGACGACGCCCCCGACTGGCCCGCCGCCTTCGTCCGCCGCTATCTCGA
CGCCGGCCACTGGCAGGACCAGAACTTCGCCGAAGCCCTGGCCGCCAGCGCCGCGCGCCATCCGCGGCGGATCGCGCTCT
GCGACGACGACCAGCGGCTCAGCTATGCCGACCTGCTCCAGCGCTGCCGCCGCCTGGCAGCCGGACTGCGCCAGGCCGGC
CTCGCACATGGCGACACGGTAGTGCTGCACCTGCCCAACGGCATCGCCTTCGTCGAGACCTGCTTCGCCCTGTTCCAGCT
CGGCGTACGCCCGGTGCTCGCCCTCCCCGCCCATCGCCAGCATGAGATCAGCGGTTTCTGTCGCTTCGCCGAGGCCATGG
CCTACATCGGCGCCGAACGGATCGACGGCTTCGACCCACGGCCGATGGCCCGTGAGCTGCTCGCCAGCGGCGCCTGCCAG
ATGGCGCTGATCCACGGCGAGGCCGAGGCGCCGCTGCAAGCGCTGGCACCGCTGTACCAGGCCGACGCGCTGGAAGACTG
CGCCGCCCGCGCCGAGGATATCGCCTGCTTCCAGTTGTCCGGCGGCACCACCGGCACGCCGAAGCTGATTCCCCGGCGTC
ATCGCGAGTATCTCTACAACGTCCGCGCCAGCGCCGAGGTCTGCGGCTTCGACGAGCACACGGTGTACCTCACCGGCTTG
CCGATGGCGCACAACTTCACTCTCTGCTGCCCCGGAGTGATCGGCACGCTGCTGGCCGGCGGCCGCGTGGTGGTCAGCCA
GCGCGCCGATCCCGAGCATTGCTTCGCCCTGATCGCCCGTGAACGGGTCACCCACACCGCCCTGGTACCGCCGCTGGCGA
TGCTCTGGCTGGATGCCCAGGAAAGCCGCCGCGCCGATCTATCCAGCCTGCGTCTGCTCCAGGTCGGCGGCTCCAGGCTC
GGCAGCAGTGCCGCGCAACGCGTCGAACCGGTGCTCGGCTGCCAGTTGCAACAGGTGCTGGGAATGGCCGAGGGGCTGAT
CTGCTACACCCGCCTGGACGATCCGCCCGAACGCGTGCTGCATACCCAGGGTCGGCCGCTGTCGCCGGACGACGAAGTGC
GGGTGGTCGACGCCGAGGGCCGCGAGGTCGGCCCCGGCGAGGTGGGCGAACTGACCGTGCGCGGTCCCTACACCATCCGC
GGCTACTACCGCCTGCCCGAACACAACGCCAAGGCCTTCAGCGCGGACGGCTTCTACCGCACCGGCGACCGGGTCAGCCG
CGACAAGGACGGCTACCTGGTGGTGGAGGGCCGCGACAAGGACCAGATCAACCGCGGCGGCGAGAAGATCGCCGCGGAAG
AGGTGGAGAACCTGCTGATAGCCCATCCGCAGGTGCACGACGCCACCGTCGTGGCGATGCCCGACAGCCTGCTCGGCGAG
CGCACCTGCGCCTTCGTCATCCCGCGCCAGCCGGCGCCCTCGGCGCTGAAGCTGAAGCAATACCTGCACGCCTGCGGGCT
GGCCGCGTTCAAGGTGCCGGACCGCATCGAGCTGGTCCCGGCCTTCCCCCAGACCGGCATCGGCAAGATCAGCAAGAAGG
ACCTGCGCGAGCGCCTGCGCCGCGAGCTGGAGGCCCGCGCATGA

Protein sequence : 
MTSSPVTPSAVDDAPDWPAAFVRRYLDAGHWQDQNFAEALAASAARHPRRIALCDDDQRLSYADLLQRCRRLAAGLRQAG
LAHGDTVVLHLPNGIAFVETCFALFQLGVRPVLALPAHRQHEISGFCRFAEAMAYIGAERIDGFDPRPMARELLASGACQ
MALIHGEAEAPLQALAPLYQADALEDCAARAEDIACFQLSGGTTGTPKLIPRRHREYLYNVRASAEVCGFDEHTVYLTGL
PMAHNFTLCCPGVIGTLLAGGRVVVSQRADPEHCFALIARERVTHTALVPPLAMLWLDAQESRRADLSSLRLLQVGGSRL
GSSAAQRVEPVLGCQLQQVLGMAEGLICYTRLDDPPERVLHTQGRPLSPDDEVRVVDAEGREVGPGEVGELTVRGPYTIR
GYYRLPEHNAKAFSADGFYRTGDRVSRDKDGYLVVEGRDKDQINRGGEKIAAEEVENLLIAHPQVHDATVVAMPDSLLGE
RTCAFVIPRQPAPSALKLKQYLHACGLAAFKVPDRIELVPAFPQTGIGKISKKDLRERLRRELEARA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
irp5 CAA73130.1 Irp5 protein Virulence HPI Protein 9e-99 51
irp5 YP_001006819.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 1e-98 51
ybtE AAA93464.1 yersiniabactin 2,3-dihydoxybenzoate-AMP ligase Virulence HPI Protein 5e-99 51
ybtE YP_853079.1 yersiniabactin siderophore biosynthetic protein Virulence PAI IV APEC-O1 Protein 8e-99 51
irp5 YP_002346898.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 7e-99 51
ybtE NP_669710.1 salicyl-AMP ligase Virulence HPI Protein 7e-99 51
ybtE NP_993003.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 7e-99 51
ybtE YP_070120.1 yersiniabactin siderophore biosynthetic protein Virulence HPI Protein 7e-99 51
ybtE CAA21394.1 - Virulence HPI Protein 7e-99 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PADK2_03530 YP_006480701.1 pyochelin biosynthesis protein PchD VFG0168 Protein 0.0 99
PADK2_03530 YP_006480701.1 pyochelin biosynthesis protein PchD VFG1817 Protein 1e-81 46
PADK2_03530 YP_006480701.1 pyochelin biosynthesis protein PchD VFG0932 Protein 9e-100 45