Gene Information

Name : PADK2_24400 (PADK2_24400)
Accession : YP_006484845.1
Strain : Pseudomonas aeruginosa DK2
Genome accession: NC_018080
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5247124 - 5247810 bp
Length : 687 bp
Strand : -
Note : COG1136 ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
TTGATCTCCCTGCGGGGGATCGGCAAGGGCTACCTCCTGGGGGGGCAGCCGCTGCAGATACTGAAAGACGTCTGCCTGGA
CATCTTTCCCGGAGAAAGCTGCGCGATCGTCGGCGCGTCGGGCTCGGGCAAGAGCACCCTGCTGAATATCCTCGGCCTGC
TCGACCGCCCGGACAGCGGTGCCTACCGCTTCGCCGAGCACGACATCTTCAGCGTCGACGGGGACCGACTGGCGGCGATC
CGCAATCGCCTGATCGGCTTCGTCTTCCAGAGCTTCAACCTGTTGCCGCGGCTGAACGCGCTGGACAACGTCGCGCTGCC
CCTGAGCTATCGAGGGATGCCGCGCCGCGAGGCACTGGAGCGGGCCGAGGCGATGCTCGCCCGGGTCGGCCTGGCCGAGC
GCGCCGGCCATCGTCCGGCGGACCTCTCCGGCGGCCAGCGGCAGCGCGTCGCCATCGCTCGCGCGCTGGTCGGCGAGCCG
GCGCTGATCCTCGCCGACGAACCAACCGGCAACCTCGACGCGAGCACCGCGAAAGAAGTGCTGGAGCTGCTTCTCACGCT
CAACCGCGAGCGCCAGGTGACCCTGGTGGTGGTCACCCACGATCCCGGCCTGGCGGCCCGTCTCGGGCGCCAACTGACAG
TACGGCATGGCGAGGTGCACGAGGACCTGGCGGAGGCCTGCCGGTGA

Protein sequence : 
MISLRGIGKGYLLGGQPLQILKDVCLDIFPGESCAIVGASGSGKSTLLNILGLLDRPDSGAYRFAEHDIFSVDGDRLAAI
RNRLIGFVFQSFNLLPRLNALDNVALPLSYRGMPRREALERAEAMLARVGLAERAGHRPADLSGGQRQRVAIARALVGEP
ALILADEPTGNLDASTAKEVLELLLTLNRERQVTLVVVTHDPGLAARLGRQLTVRHGEVHEDLAEACR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-25 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-26 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 9e-26 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-26 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PADK2_24400 YP_006484845.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 2e-43 52
PADK2_24400 YP_006484845.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 8e-48 50
PADK2_24400 YP_006484845.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 2e-34 45
PADK2_24400 YP_006484845.1 ABC transporter ATP-binding protein NC_012469.1.7686946. Protein 6e-25 43
PADK2_24400 YP_006484845.1 ABC transporter ATP-binding protein CP001581.1.gene598.p Protein 4e-29 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PADK2_24400 YP_006484845.1 ABC transporter ATP-binding protein VFG2059 Protein 9e-15 42