|
Name : PADK2_23795 (PADK2_23795) Accession : YP_006484724.1 Strain : Pseudomonas aeruginosa DK2 Genome accession: NC_018080 Putative virulence/resistance : Virulence Product : type IVB pilus formation outer membrane protein Function : - COG functional category : - COG ID : - EC number : - Position : 5123690 - 5125264 bp Length : 1575 bp Strand : + Note : COG4796 Type II secretory pathway, component HofQ DNA sequence : ATGCGCAACACCCGACCGGATCGCCGCGATACGGTGGTGTTCTCCGACAAACCCTGGGTCAGCACGAAGCCCCTGAGCGT TTCGCACACCTTGTCCAGTGACTGCATCGTGACGTGGCGCCCTGCAGGCGCAGCGTCGCTGCAGGAGGCCGCCCAGGAAG TCATCAACCAATGCCACCTGGCGGTCAGTATCACGCCCGACGCGCTGAACCCGGCCGCTTTTGCCCTGCAACCTCAGCAG CGCGCGAGCAACGCCCCGCCGCCCATCCAAGGCGGCCAGGACATGGCCACCATGCTGTTTCCTGCCTCCGTCGCCAACGG CATGTCCCTAGGTGCCGGCGGCAGCATGGGGGCGAGCTTCGGGTCCTACGGCCCGCGGTCGCTGTACAACATCAAATGGA ACGGCAAGGTCAGCGGATTCCTCGATCTCATCGCCGCCCGCGCCGGCGTGTCCTGGCGCTACAACCCAACCGAGAAACGG GTTGAGTTCTACTACCTGGACACTCGGACCTTCCGTATCTACGCCTTCGACGACGTCAACACGGTGGACTCCACCGTGCG TTCCGGTATGACGACGGCCGCCGGCATCAGCGGGGATGGCTCCGGATCCACTGGACAGAATGGCAGCTCCGGCATCAGCG GCGACTCCGGCAGCAAGCAGACCACCAGCTCTGAGCTGAAGACCTCGATCCTCAGCGACATCGAGAACAGCATCAACTCG ATGCTGACGCCGAGCATGGGACGCATGTCGCTGTCGCGTGCCACGGGCACCCTGACCGTCACCGACCGACCAGAGGTCCT CAACCGCGTCCAGCAGTTGGTCAACCGGGAGAACGAGAGCATCACCAAGCAAGTGCTGCTGAACGTCAACGTGCTCTCGG TCGCCCTGACCGACAAGGATCAACTGGGGATCGACTGGAACCTGGTCTACAAGTCACTCAACAACAAGTGGGGCATCGGC CTGAAGAACACCATGCCGGGCATCGACCAAAGTGCGATCTCCGGCTCCGTGAGCATCCTGGATACCGCCAACAGCGCCTG GGCCGGCTCCAAAGCCATGGTCCAGGCGCTGGCCCAGCAAGGCCGCGTCTCGACCGTCCGCTCCCCGTCCGTGACTACGC TCAACCTTCAGTCGGCGCCGATCCAGATCGGCCGCTACGACAGCTACCTGGCCTCCAGCCAGATCTCCAACGTCGCCCAG GTCGGCAGTACCACCTCGCTGATCCCGGGCGCCGTGACCAGCGGCTACAACATGAGCCTGCTGCCGTTCGTGATGGAAAA CGGCGAGATGCTGCTGAAGATCAACATCAACATGACCTCCCGGCCGACGTTCGAAATGCAGACCAGCGGGGACTCCAAAG CCCAGTTCCCGAGCTACGACATCCAGCTGTTCGACCAGAAGGTACGCCTGCGCAGCGGCGAGACCTTGGTGCTCTCCGGC TTCGACCAGACCACCGAGGACACCAACAAGGTCGGCACCGGCGACGCTGGGTTCTTCGGGCTTGGCGGCGGGCTGACCCG CAACACCAAGCGCGAGGTCATCGTGGTGCTGATCACCCCCGTCGTGCTGGGCTGA Protein sequence : MRNTRPDRRDTVVFSDKPWVSTKPLSVSHTLSSDCIVTWRPAGAASLQEAAQEVINQCHLAVSITPDALNPAAFALQPQQ RASNAPPPIQGGQDMATMLFPASVANGMSLGAGGSMGASFGSYGPRSLYNIKWNGKVSGFLDLIAARAGVSWRYNPTEKR VEFYYLDTRTFRIYAFDDVNTVDSTVRSGMTTAAGISGDGSGSTGQNGSSGISGDSGSKQTTSSELKTSILSDIENSINS MLTPSMGRMSLSRATGTLTVTDRPEVLNRVQQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIG LKNTMPGIDQSAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYLASSQISNVAQ VGSTTSLIPGAVTSGYNMSLLPFVMENGEMLLKININMTSRPTFEMQTSGDSKAQFPSYDIQLFDQKVRLRSGETLVLSG FDQTTEDTNKVGTGDAGFFGLGGGLTRNTKREVIVVLITPVVLG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| pilN2 | AAP84210.1 | PilN2 | Virulence | PAPI-1 | Protein | 0.0 | 99 |
| unnamed | ABR13431.1 | putative PilN | Not tested | PAGI-5 | Protein | 0.0 | 99 |
| pilN | CAI36059.1 | type IV pilus protein | Not tested | PPHGI-1 | Protein | 1e-98 | 49 |
