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Name : PADK2_12250 (PADK2_12250) Accession : YP_006482435.1 Strain : Pseudomonas aeruginosa DK2 Genome accession: NC_018080 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : - COG ID : - EC number : - Position : 2585707 - 2587737 bp Length : 2031 bp Strand : - Note : COG0550 Topoisomerase IA DNA sequence : ATGCGGCTGTTCTTGTGCGAGAAGCCCTCCCAGGGCAAAGACATTGGCCGGATTCTCGGCGCCACGCAGCGCGGTGAAGG CTGCCTCAACGGTTCCGGCGTCACGGTCACCTGGTGCATCGGCCATCTCGTGGAGGCGGCGCCGCCCGAGGCCTACGACG AGCAGCTCAAACGATGGTCCGTTGAGCAGTTGCCCATCATTCCCCAGCACTGGCGGGTCGAGGTCAAACCGAAGACCGCC ACGCAATTCAAGGTCGTCAAGGCGCTCTTGGCGAAGGCGACTCACCTGGTTATCGCCACCGATGCCGACCGCGAGGGCGA ATTGATCGCCCGCGAGATCGTGGAGCTTTGCGGCTACCGCGGCCCCATCGAACGCCTGTGGCTGTCGGCGCTCAACGATG CGTCCATTCGGGCGGCACTGGGCAAGCTGCGGCCTTCGGCCGAGACGCTTTCGATGTACCACTCGGCGCTGGCGCGCTCC CGTGCGGATTGGCTCGTGGGCATGAACCTGAGCCGGCTGTTCACGGTGCTGGGGCGACAGGCGGGTTACGACGGCGTGCT GTCGGTCGGCCGCGTACAGACCCCGACGCTCAAGCTCGTTGTGGACCGCGACCGCGAGATCGCGCGCTTCGTGTCCGTAC CATACTGGGCCATCGCCGTGTCCCTGTTCGCAGGCGGTTCGACTTTCGCCGCGCAATGGGTTCCACCCGATGCGTGCACC GACGACGCAGGCCGCTGCCTGCGGCAGCCGGTCGCACAGCAGACCATGCAGCAGATCCGCGCTGCGGGCAGTGCCCACGT CGTGTCGGTGGAGACTGAGCGTGTCCGCGAAGGCCCGCCGCTGCCGTTCGACCTGGGCACCTTGCAGGAAGTGTGTTCCA AGCAGCTTGGGCTGGACGTGCAGGAAACCTTGGAGATTGCCCAAGCCCTGTACGAGACGCACAAGGCCACGACGTACCCC CGCTCGGACTCCGGCTACCTGCCCGAGAGCATGTTTGCCGAAGTGCCCACCGTTCTCGACAGCCTGCTCAAGACCGATCC CTCGCTGCGCTCGATCATGGGCCAGCTCGACCGCTCGCAGCGCTCGCGCGCCTGGAACGATGGCAAGGTCACGGCGCACC ACGGCATCATCCCGACGCTCGAACCGGCGAAGCTCTCCGCCATGAGCGAGAAGGAACTGGCCGTGTACAGGCTCATCCGG TCGCATTACCTGGCGCAGTTCCTCCCTCACCACGAGTTCGACCGCACTGTGGCCAAGTTTTCGTGCGGGGGGCAGAACCT GGCGGCCACGGGCAAGCAGGTTGTCATCCCGGGTTGGCGCCAGGTGCTCGCCGAGCCGCAGGCCGAAGACGGTGATGGCG AGGGCGATACTGCGGTCCGCGCCCAGGTGCTGCCCGCGCTGCCGAAACTGTATGAGGGCCTGGCATGCCAGGTGGCCGAC GTCGATCTCAAGGCACTCAAGACGCTGCCGCCCAAACCGTACACGCAAGGCGAGTTGGTCAAGTCCATGAAAGGCGTCGC CAAGCTGGTGTCCGATCCCCGCCTGAAGCAGAAGCTCAAGGATACGGTTGGCATCGGCACCGAAGCGACGCGGGCCAACA TCATCGGCGGCCTGATCGCTCGCGGCTACCTCGTGAAGAAGGGGCGCGCCATCCGCGCCTCGGATGCGGCTTTCACTTTG ATCGATGCCGTGCCTGCGGCGATTGCCGACCCTGGCACCACCGCCGTCTGGGAACAGGCGCTCGACATGATCGAGGCCGG ACAGCTCACCCTGGACGTGTTCATCGGCAAGCAGGCCGCGTGGATTTCGCAGTTGATTGCGCAGTACGGCAGCGCCTCCC TGTCCATCAAGGTTCCCCAAGGGCCGGCATGCCCGCAGTGCGGCGCACCCACGCGCCAGCGCAGCGGCAAGAGCGGCCCG TTCTGGTCGTGCAGCCGCTACCCGGACTGCAAAGGCACGCTGCCAGTCGAATCCGGCAGCTCCAAGCGCGGCGCCTCGCG CCCGCGCCGTAGCGGCCGCAAAGGCTCCTGA Protein sequence : MRLFLCEKPSQGKDIGRILGATQRGEGCLNGSGVTVTWCIGHLVEAAPPEAYDEQLKRWSVEQLPIIPQHWRVEVKPKTA TQFKVVKALLAKATHLVIATDADREGELIAREIVELCGYRGPIERLWLSALNDASIRAALGKLRPSAETLSMYHSALARS RADWLVGMNLSRLFTVLGRQAGYDGVLSVGRVQTPTLKLVVDRDREIARFVSVPYWAIAVSLFAGGSTFAAQWVPPDACT DDAGRCLRQPVAQQTMQQIRAAGSAHVVSVETERVREGPPLPFDLGTLQEVCSKQLGLDVQETLEIAQALYETHKATTYP RSDSGYLPESMFAEVPTVLDSLLKTDPSLRSIMGQLDRSQRSRAWNDGKVTAHHGIIPTLEPAKLSAMSEKELAVYRLIR SHYLAQFLPHHEFDRTVAKFSCGGQNLAATGKQVVIPGWRQVLAEPQAEDGDGEGDTAVRAQVLPALPKLYEGLACQVAD VDLKALKTLPPKPYTQGELVKSMKGVAKLVSDPRLKQKLKDTVGIGTEATRANIIGGLIARGYLVKKGRAIRASDAAFTL IDAVPAAIADPGTTAVWEQALDMIEAGQLTLDVFIGKQAAWISQLIAQYGSASLSIKVPQGPACPQCGAPTRQRSGKSGP FWSCSRYPDCKGTLPVESGSSKRGASRPRRSGRKGS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 100 |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 75 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 63 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 9e-172 | 50 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 9e-172 | 50 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 7e-172 | 50 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 1e-167 | 49 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 3e-171 | 49 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 2e-123 | 41 |
