Gene Information

Name : PADK2_11970 (PADK2_11970)
Accession : YP_006482379.1
Strain : Pseudomonas aeruginosa DK2
Genome accession: NC_018080
Putative virulence/resistance : Unknown
Product : type IV secretory pathway, VirB4 component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2536451 - 2539345 bp
Length : 2895 bp
Strand : -
Note : COG3451 Type IV secretory pathway, VirB4 components

DNA sequence :
ATGCGGTGGAAACTTCCCTGGCCTAAGCCGGCCGCGCCGAAGCTGGCCGCATCCGGCGCTGGTGATGATGAGCAGCCGGA
CGGCTGGCAGCGCCACGTCGAGGCCTTGCGGCAGGTCGGCATCTCCGAACCCGGCTCGGCAGTCCGGGGCCGCAAGCCGG
CGACGGAGGCCGACGAGCAGGCGCTGTACGACGTCGCACCGTCCTTCGTGGAACTGCTGCCCTGGGTGGAGTTCTTGCCC
GAGTCGAAATCGATGCTCCTGGAGGACGGCCAATCGGTGGCCGCCTTCTTCGAGCTGGTGCCGCTGGGGACCGAGGGCCG
GGAACCCGGCTGGCTCGCGCACGCCCGCGACGCCTTAGAAAACGCGCTCCAGGACAGCTTCGATGAACTGGACGAGAACC
CCTGGGTGTTGCAGCTCTACGCCCAGGACGAACCGAGCTTCGACCAGTACATGCAGACGTTGCGCGACTACGTGCAGCCG
CGCGCCCGTGGCACGGTGTTCACGGAGTTCTACCTGCGGTTCTTTGCCCACCATCTGCGCGCGGTGGCCAAGCCCGGTGG
CTTGTTCCAGGACACGGTGGTCACACGCTTGCGCTGGCGCGGCCAGACGAGGCGTGTGCGCATGGTCGTCTATCGCCGCG
TGACCGGACAAGGACAGGGCCAGGCAAACCGCCGGGGCCAGACACCCGAGCAGATGCTGAACATCGTCTGCGACCGCCTG
TGCGGCGGGCTGGCGAACGCCGGCATCCAGGCTCGCCGCCTGGGTGCGGCAGACGTCCATGACTGGCTGCTGCGCTGGTT
CAACCCGCGTCCGACGCTGCTCGGGCCTGGGGTCGAGGACCGGGAGCGCTTCTATGCGTTCGCGCGCTACCCCGCCGACA
CCGAGGCTGGCGAGATCGAACTGGCGAGCGGGCGGGATTTTAGCCAGCGGCTTTTCTTCAGCCAGCCACGCTCGGACGTG
GAGCATGGCACCTGGCACTTCGACGGCATACCGCACCGTGTGTTGGTCACTGACCGGCTGCGCATGCCGCCCGGAACGGG
ACACCTGACTGGCGAAACCCGCAAGGGCGATGCGATCAACACGCTGTTCGATCAGATGCCCGAGGACACGACGATGTGTC
TGACCATGGTGGCGACGCCCCAGGACATTCTCGAATCGCACCTGAACCACCTGGCGAAGAAGGCAGTCGGCGAAACACTG
GCATCGGAGCAGACGCTCAAGGACGTGCAGGAGGCGCGCTCGCTCATCGGCAGCGCGCACAAACTCTACCGCGGCACGCT
GGCCTTCTATCTGCGCGGACGCGACGAAGCCGAGCTTGACCGGCGCGGTCTGGACCTCGCCAACGTGATGCTCAACGCGG
GGTTGCAGCCCGTTCGCGAGGACGATGAAGTCGCGCCGCTCAACAGCTATCTGCGCTGGCTACCGTGCTGCTACAACCCC
GCGCAGGATCGGCGAAACTGGTTCACCCAACTGATGTTCGCCCAGCATGTGGCGAATCTCTCGCCGGCGTGGGGTCGCAG
CCAGGGTACGGGCCATCCGGGCAACACGTTCTTCAACCGCGGTGGCGGGCCGATCACGTTTGATCCGCTGAACCGCTTAG
ACAGGCAGATGAATGCCCATCTATTCCTGTTCGGCCCCACCGGCTCGGGCAAGAGCGCCACGCTCAACAACCTGCTGAAC
CAGGTCACGGCCATCTACCGGCCGCGCCTCTTCATCGTGGAAGCCGGCAACAGCTTCGGGCTGTTCAGCGACTTCGCCAG
GCGCCTGGGCCTGACGGTGAACCGGGTCAAGCTGGCCCCCGGATCGGGCATCAGCCTGGCACCGTTCGCGGATGCCCGCC
GGCTGATCGAAACACCCAGCGACGTGCAGACGCTCGATGCCGATGCGTTGGACGAAGACCTGCCACCGGATGCCTCGGTC
ATGGAGGCAGACGAACAGCGTGACGTGTTGGGCGAGTTGGAGATCACGGCACGGCTGATGATCACCGGCGGCGAGGACAA
GGAGGAAGCCCGGATGACGCGGGCCGACCGTTCGCTGATCCGCCAGTGCATCCTCGACGCCGCCGAACACTGCGTGGCTG
AGAAGCGCACGGTGCTCACTCGCGACGTGCGCAACGCGCTGCGCGCCCGCGGTCAGGACTCGACGCTTCCCGAGATGCGG
CGCATGCGGCTGCTGGAGATGGCGGACGCGATGGACATGTTCTGCCAAGGCACCGATGGCGAGATGTTCGACCGCGATGG
CACGCCGTGGCCCGAGGCCGACATCACGCTGGTGGATCTGGCGACCTATGCCCGCGAGGGCTACAACGCGCAGCTCTCCA
TCGCCTACATCAGCCTGATCAGCACGGTGAACAACATCGCCGAGCGCGACCAGTACCTGGGTCGTCCGATCATCAATGTG
ACCGACGAAGGCCACATCATCACGAAGAACCCGTTGCTCGCGCCCTACGTCGTGAAAATTACCAAGATGTGGCGCAAATT
GGGCGCCTGGTTCTGGCTGGCGACCCAGAACATCGACGACCTGCCGCGTGCCGCAGAGCCCATGCTCAACATGATTGAGT
GGTGGATCTGCCTGTCGATGCCGCCCGATGAGGTCGAGAAGATTGCACGCTTCCGTGAACTCTCACCAGCGCAGAAAGCG
CTGATGCTTTCTGCGCGCAAGGAGGGGGGGAAATTCACCGAGGGCGTGATCCTGTCGAAGTCGATGGAAGTGTTGTTCCG
CGCGGTGCCGCCGAGCCTTTACCTCGCGCTTGCGCAGACCGAACCCGAGGAGAAGGCCGAGCGCTACCAGCTCATGCAGC
AATACGGCTGCACCGAGCTGGAAGCCGCCTTCAAGGTGGCCGAGAAGATCGACCAGGCACGCGGCATCGAGTCGCCCGCC
TTGGAACTGTCGTAA

Protein sequence :
MRWKLPWPKPAAPKLAASGAGDDEQPDGWQRHVEALRQVGISEPGSAVRGRKPATEADEQALYDVAPSFVELLPWVEFLP
ESKSMLLEDGQSVAAFFELVPLGTEGREPGWLAHARDALENALQDSFDELDENPWVLQLYAQDEPSFDQYMQTLRDYVQP
RARGTVFTEFYLRFFAHHLRAVAKPGGLFQDTVVTRLRWRGQTRRVRMVVYRRVTGQGQGQANRRGQTPEQMLNIVCDRL
CGGLANAGIQARRLGAADVHDWLLRWFNPRPTLLGPGVEDRERFYAFARYPADTEAGEIELASGRDFSQRLFFSQPRSDV
EHGTWHFDGIPHRVLVTDRLRMPPGTGHLTGETRKGDAINTLFDQMPEDTTMCLTMVATPQDILESHLNHLAKKAVGETL
ASEQTLKDVQEARSLIGSAHKLYRGTLAFYLRGRDEAELDRRGLDLANVMLNAGLQPVREDDEVAPLNSYLRWLPCCYNP
AQDRRNWFTQLMFAQHVANLSPAWGRSQGTGHPGNTFFNRGGGPITFDPLNRLDRQMNAHLFLFGPTGSGKSATLNNLLN
QVTAIYRPRLFIVEAGNSFGLFSDFARRLGLTVNRVKLAPGSGISLAPFADARRLIETPSDVQTLDADALDEDLPPDASV
MEADEQRDVLGELEITARLMITGGEDKEEARMTRADRSLIRQCILDAAEHCVAEKRTVLTRDVRNALRARGQDSTLPEMR
RMRLLEMADAMDMFCQGTDGEMFDRDGTPWPEADITLVDLATYAREGYNAQLSIAYISLISTVNNIAERDQYLGRPIINV
TDEGHIITKNPLLAPYVVKITKMWRKLGAWFWLATQNIDDLPRAAEPMLNMIEWWICLSMPPDEVEKIARFRELSPAQKA
LMLSARKEGGKFTEGVILSKSMEVLFRAVPPSLYLALAQTEPEEKAERYQLMQQYGCTELEAAFKVAEKIDQARGIESPA
LELS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ORF C47 AAN62141.1 hypothetical protein Not tested PAGI-2(C) Protein 0.0 93
ORF SG57 AAN62279.1 hypothetical protein Not tested PAGI-3(SG) Protein 0.0 78
virB4 CAI36125.1 VirB4 component Not tested PPHGI-1 Protein 0.0 66
unnamed ABR13362.1 hypothetical protein Not tested PAGI-5 Protein 0.0 62
EXA33 ABD94642.1 conserved hypothetical protein Not tested ExoU island A Protein 0.0 61
RL022 AAP84149.1 conserved hypothetical protein Not tested PAPI-1 Protein 0.0 61
YE3482 YP_001007641.1 hypothetical protein Not tested YAPI Protein 0.0 52
STY4573 NP_458658.1 hypothetical protein Not tested SPI-7 Protein 0.0 52
PMI2576 YP_002152295.1 hypothetical protein Not tested Not named Protein 0.0 52
YpsIP31758_3705 YP_001402659.1 hypothetical protein Not tested YAPI Protein 0.0 51
api39 CAF28513.1 hypothetical protein Not tested YAPI Protein 0.0 51
Pmu_03070 YP_005176206.1 conjugative transfer ATPase TraC-like, PFL family Not tested ICEPmu1 Protein 0.0 50