Gene Information

Name : A3UG_04555 (A3UG_04555)
Accession : YP_006476358.1
Strain : Enterobacter cloacae SDM
Genome accession: NC_018079
Putative virulence/resistance : Unknown
Product : prophage CPS-53 integrase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1018706 - 1019920 bp
Length : 1215 bp
Strand : +
Note : COG0582 Integrase

DNA sequence :
GTGAAACTAAACGCCCGGCAGGTGGATGCCGCCAAACCTAAAGATAATCCTTACAAGCTGGCTGATGGTGGTGGTTTGTA
TCTCCTGATTAAACCTAATGGCGGCAAATACTGGCGACTCAAGTATCGTGTAGCCGGCAAAGAGAAGCTGTTAGCGCTTG
GTGTGTATCCTGAAGTCACATTGGCCGATGCTCGGGCAAAACGTGAAGAAGCGAAAAGGGGTATCGCTGGGGGTATCGAT
CCTATGGAAGCGAAACGGGAGGAGAAGATTGCCCGTGAAATTCAGTTAAACAACACCTTCAAAGATATTGCCCTTGAATG
GCACAGCAGCAAACTAAAAAAATGGTCTGCTGGTTATGCTTCAGACATCCTCGAAGCCTTCAATAAAGATGTGTTCCCAT
ACATTGGCAAAAAACCAATAGCCGAAATCAAACCGCTTGAACTGTTGAATGTGCTACGGCGCATTGAAGGGCGCGGCGCT
ACCGAAAAGGCAAGAAAAGTTAGGCAGCGCTGTGGGGAAGTTTTCCGTTACGCAATAGTCACCGGTCGAGCTGAGTATAA
CCCCGCCCCGGATCTCACCAGCGCGATGCAAGGGCACGAGTCCAATCATTTTCCTTTCCTCACACCTAAAGAATTGCCTG
ATTTCTTCAATGCGTTGTCAGGATATTCAGGAAGCGAGTTAGTAGTTTTGGCTGCTCGTTTACTGATTATCACCGGATTG
CGTCCCGGCGAACTCCGTGGGGCATTTTGGGATGAAATCAATATCAGTAAGGCGGTCTGGGAAATACCCGCCTCACGCAT
GAAAATGCGTCGCCCTCATGTGGTGCCATTGTCTAGGCAAGCTCTTACGCTTATTGGTCAGATCCAAGAGCTAACAGGCA
ATTACCCGCTTGTGTTTCCAGGCCGTAACGATCCGCGAAAAACAATGAGTGAAGCCAGCATAAACCAAGTCTTTAAGCGG
ATTGGCTATAACGGAAAAGTCACCGGGCACGGTTTCCGGCACACCATGAGTACCATCCTGCACGAACAGGGCTACAACAC
CGCGTGGATTGAAACGCAGCTGGCACACGTCGACAAAAACTCTATACGAGGAACGTACAACCACGCCCAGTATCTGGATG
GCCGCCGCGAAATGCTCCAGTGGTATGCCGACTATATGGAGGCGTTGGAAAACGGCGAAAATGTAGTGCACGGAACGTTT
GGGAAAAGCGCTTAA

Protein sequence :
MKLNARQVDAAKPKDNPYKLADGGGLYLLIKPNGGKYWRLKYRVAGKEKLLALGVYPEVTLADARAKREEAKRGIAGGID
PMEAKREEKIAREIQLNNTFKDIALEWHSSKLKKWSAGYASDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGA
TEKARKVRQRCGEVFRYAIVTGRAEYNPAPDLTSAMQGHESNHFPFLTPKELPDFFNALSGYSGSELVVLAARLLIITGL
RPGELRGAFWDEINISKAVWEIPASRMKMRRPHVVPLSRQALTLIGQIQELTGNYPLVFPGRNDPRKTMSEASINQVFKR
IGYNGKVTGHGFRHTMSTILHEQGYNTAWIETQLAHVDKNSIRGTYNHAQYLDGRREMLQWYADYMEALENGENVVHGTF
GKSA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 5e-136 70
aec33 AAW51716.1 Int Not tested AGI-3 Protein 7e-128 65
int CAC39282.1 integrase Not tested LPA Protein 7e-128 65
int AAD44730.1 Int Not tested SHI-2 Protein 5e-126 64
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 4e-127 64
ECs4534 NP_312561.1 integrase Not tested LEE Protein 4e-127 64
int AAC31482.1 CP4-like integrase Not tested LEE Protein 3e-127 64
int ACU09430.1 integrase Not tested LEE Protein 3e-127 64
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 5e-126 64
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 5e-126 64
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 4e-126 64
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 4e-122 61
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 1e-72 44
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 1e-72 44
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 3e-76 42
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 4e-76 42
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-76 42
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-76 42
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-76 42
int AAL51003.1 CP4-like integrase Not tested LEE Protein 7e-76 42
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 6e-76 42
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 4e-76 42
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 4e-70 41
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-75 41
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 4e-76 41
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 4e-76 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 8e-75 41
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 2e-75 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 6e-76 41
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 5e-76 41
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 3e-76 41
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 5e-76 41
int AAL51028.1 CP4-like integrase Not tested LEE Protein 3e-76 41
int-phe AAL60261.1 Int-phe Not tested LEE Protein 3e-76 41
int AAK00456.1 Int Not tested SHI-1 Protein 4e-69 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A3UG_04555 YP_006476358.1 prophage CPS-53 integrase VFG0783 Protein 2e-127 64
A3UG_04555 YP_006476358.1 prophage CPS-53 integrase VFG0598 Protein 2e-126 64
A3UG_04555 YP_006476358.1 prophage CPS-53 integrase VFG0626 Protein 2e-76 41
A3UG_04555 YP_006476358.1 prophage CPS-53 integrase VFG1693 Protein 3e-76 41