Gene Information

Name : lysS (A3UG_18585)
Accession : YP_006479137.1
Strain : Enterobacter cloacae SDM
Genome accession: NC_018079
Putative virulence/resistance : Virulence
Product : lysyl-tRNA ligase
Function : -
COG functional category : -
COG ID : -
EC number : 6.1.1.6
Position : 4018670 - 4020187 bp
Length : 1518 bp
Strand : -
Note : COG1190 Lysyl-tRNA synthetase (class II)

DNA sequence :
ATGTCTGAACAACAAGCACAGGGCGCTGACGCGGTAGTCGATCTTAACAACGAACTGAAAACACGCCGCGAGAAGCTGGC
AGCGCTGCGCGAGCAGGGCGTGCCGTTCCCGAACGATTTTCGTCGTGATCACACCTCAGACCAACTGCACGCTGACTTCG
ACGCTAAAGAAAACGAAGAGCTGGAAGCGCTGAACATCGAAGTGGCCGTTGCGGGCCGCATGATGACCCGTCGTATCATG
GGTAAAGCCTCTTTCGTTACCCTGCAGGACGTGGGCGGCCGCATTCAGCTGTATGTTTCCCGTGACGATCTGCCGGAAGG
CATCTACAACGAGCAGTTCAAGAAGTGGGACCTGGGCGATATCCTCGGCGCGAAAGGTAAACTGTTCAAAACCAAGACCG
GTGAACTGTCTATCCACTGTACCGAACTGCGTCTGCTGACCAAAGCCCTGCGCCCGCTGCCGGACAAATTCCACGGCCTG
CAGGATCAGGAAGCGCGCTACCGTCAGCGTTACCTGGATCTCATCTCTAACGATGAATCCCGCAAGACCTTCAAAATTCG
CTCTCAGATCATGGCCGGTATCCGCCAGTTCATGGTTAACCGCGACTTTATGGAAGTAGAAACCCCAATGATGCAGGTGA
TCCCTGGCGGCGCATCTGCGCGTCCGTTCATCACCCATCATAACGCCCTGGATCTGGACATGTACCTGCGTATCGCGCCG
GAACTGTACCTGAAGCGTCTGGTGGTGGGTGGGTTCGACCGCGTGTTCGAAATCAACCGTAACTTCCGTAACGAAGGTAT
CTCCGTGCGTCATAACCCAGAGTTCACCATGATGGAACTCTATATGGCGTATGCCGATTACAAAGATCTGATCGAGCTGA
CCGAATCCCTGTTCCGCACCCTGGCGCAGGACATTCTGGGCACCACGCAGGTCCCTTACGGTGAAGAAGTGTTCGACTTC
GGCAAGCCGTTCGAAAAACTGACCATGCGCGAAGCCATCAAAAAATACCGCCCGGAAACCAACATGGCGGATTTGGATAA
CTTCGATTCTGCGAAAGCGATCGCTGAAAGCATCGGTATTAAAGTCGAGAAGAGCTGGGGTCTGGGCCGTATCGTGACTG
AGATCTTCGAAGAAGTGGCTGAAGCGCACCTGATTCAGCCGACCTTTATTACTGAATACCCGGCTGAAGTGTCCCCGCTG
GCGCGTCGTAATGACGAGAACCCGGAGATCACTGACCGCTTTGAATTCTTCATCGGTGGCCGCGAAATCGGCAACGGCTT
TAGCGAGCTGAACGATGCTGAAGATCAGGCGCAGCGCTTCCAGGATCAGGTTGACGCGAAAGCGGCAGGCGACGACGAAG
CGATGTTCTTCGACGAAGACTACGTGACGGCCCTGGAGCACGGCCTGCCACCAACGGCGGGTCTGGGTATTGGTATCGAC
CGTATGGTGATGCTGTTCACCAACAGCCACACCATCCGCGACGTGATCCTGTTCCCGGCGATGCGTCCGGTGAAATAA

Protein sequence :
MSEQQAQGADAVVDLNNELKTRREKLAALREQGVPFPNDFRRDHTSDQLHADFDAKENEELEALNIEVAVAGRMMTRRIM
GKASFVTLQDVGGRIQLYVSRDDLPEGIYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGL
QDQEARYRQRYLDLISNDESRKTFKIRSQIMAGIRQFMVNRDFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAP
ELYLKRLVVGGFDRVFEINRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGTTQVPYGEEVFDF
GKPFEKLTMREAIKKYRPETNMADLDNFDSAKAIAESIGIKVEKSWGLGRIVTEIFEEVAEAHLIQPTFITEYPAEVSPL
ARRNDENPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFQDQVDAKAAGDDEAMFFDEDYVTALEHGLPPTAGLGIGID
RMVMLFTNSHTIRDVILFPAMRPVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 7e-172 70
lysS YP_005163386.1 lysyl-tRNA synthetase Not tested Not named Protein 8e-94 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lysS YP_006479137.1 lysyl-tRNA ligase VFG1668 Protein 4e-172 70