Gene Information

Name : SCIM_1429 (SCIM_1429)
Accession : YP_006470330.1
Strain : Streptococcus intermedius JTH08
Genome accession: NC_018073
Putative virulence/resistance : Virulence
Product : manganese/zinc ABC transporter substrate-binding lipoprotein precursor
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1627301 - 1628233 bp
Length : 933 bp
Strand : +
Note : -

DNA sequence :
ATGAAAAAATTAGGTTTTGTCACCGTTCTATTTTTGGCTGTCATCGGGCTCTTTGCTTGTGCTGGTCAAAAAGGAACTTC
TACCAACAAATCTTCAAAATTGAATGTTGTTGCTACCAACTCGATCATCGCTGATATTACCAAAAATATCGCTGGTGATA
AAATCAATCTGCACAGTATCGTTCCTGTCGGAAAAGATCCACATGAATACGAACCATTACCAGAAGATGTGAAAAAAACA
TCAAAAGCTGATTTGATTTTCTACAATGGTATCAATTTGGAAACCGGCGGAAATGCTTGGTTTACAAAATTGGTCAAAAA
TGCGAAAAAGACTGAAAACAAAGATTACTATGCTGTAAGTGATGGAGTGGATGTTATCTATCTGGAAGGTCAAAATGAAA
AAGGGAAAGAAGATCCACACGCTTGGCTAAATCTTGAAAACGGAATTATCTATGCGAAAAATATTGCAAAACGGTTGATT
GAAAAAGATCCTAAAAATAAAGAAACTTACGAAAAGAATTTGAAAGCCTACACTGCAAAACTCGAATCATTAGACAAGGA
AGCAAAAGCAAAATTTAAGAATATTCCTACTGAAAAGAAAATGATTGTTACCAGCGAAGGCTGCTTCAAATACTTCTCTA
AAGCCTACGGCGTACCTTCTGCCTACATCTGGGAAATTAACACAGAAGAAGAAGGAACTCCAGACCAAATCAAAACTTTA
GTTGAAAAACTTCGTAAAACCAAAGTTCCTTCACTCTTTGTCGAAAGTAGTGTCGATGAACGTCCAATGAAAACCGTTTC
AAAAGATACAAAAATTCCAATCTATGCCAAGATTTTCACTGACTCAATCGCTGAAAAAGGGAAAAAAGGGGATAGCTACT
ACGACATGATGAAATGGAATTTGGATAAAATTGCCGAAGGTCTTAGCAAATAA

Protein sequence :
MKKLGFVTVLFLAVIGLFACAGQKGTSTNKSSKLNVVATNSIIADITKNIAGDKINLHSIVPVGKDPHEYEPLPEDVKKT
SKADLIFYNGINLETGGNAWFTKLVKNAKKTENKDYYAVSDGVDVIYLEGQNEKGKEDPHAWLNLENGIIYAKNIAKRLI
EKDPKNKETYEKNLKAYTAKLESLDKEAKAKFKNIPTEKKMIVTSEGCFKYFSKAYGVPSAYIWEINTEEEGTPDQIKTL
VEKLRKTKVPSLFVESSVDERPMKTVSKDTKIPIYAKIFTDSIAEKGKKGDSYYDMMKWNLDKIAEGLSK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0577 NP_814342.1 adhesion lipoprotein Virulence Not named Protein 5e-111 79
ef0095 AAM75298.1 EF0095 Not tested Not named Protein 3e-111 79

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SCIM_1429 YP_006470330.1 manganese/zinc ABC transporter substrate-binding lipoprotein precursor VFG1359 Protein 5e-119 84
SCIM_1429 YP_006470330.1 manganese/zinc ABC transporter substrate-binding lipoprotein precursor VFG2165 Protein 2e-87 59
SCIM_1429 YP_006470330.1 manganese/zinc ABC transporter substrate-binding lipoprotein precursor VFG2157 Protein 2e-81 55