Gene Information

Name : Desaci_3980 (Desaci_3980)
Accession : YP_006468178.1
Strain : Desulfosporosinus acidiphilus SJ4
Genome accession: NC_018068
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4138241 - 4138930 bp
Length : 690 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence : 
ATGGAGTCCAAGGGGAAATCAGTTCTCATTGTCGAAGACGATGCTAAAATCCGCCAATTGGTCAAATTGTACTTGGAAAA
AGAAGGTTATGAAGCCTTGGAAGCAGAAGACGGAGAAGATGCTTTGGACAAGTTTAAACAATTTGACCCCTGTTTGGTGA
TTCTCGATCTTATGTTACCCAAGTTAAGCGGAGAAGAAGTATGTACAATGATCCGATCAGACTTGAAAAGCACAGTACCC
ATTATCATGTTGACAGCCAAAGTCGAAGAGGCTGAACGTATCCAGGGGTTGAAAATGGGTGCGGATGATTATGTTACTAA
GCCTTTCAGCCCACAGGAATTGGTGACAAGAGTTGAGGTCGTCTTGCGGCGCACCGCTCAGCGCTGCAGGAAAATAACCT
ACAGGGGTCTTACTCTGAAACCGTTAAAGGGAGAAATCCATTACAAAGGAGAGTCCATTATTTTGACTCACCATGAATTT
CGCTTGCTCTACTTTCTCATGAGTCATGCCAACCAGATTTTGACTAGGGAACAAATTATGGAAGAACTTTATCCTCATCA
GGAAAAAATAGTTACAGAAAGAACCGTCGACGTTCATATAGGTAAACTACGGGAAAAACTCAGATATGACGGTAACAGTG
AAATCATTGAAACAGTTAGGGGAATGGGGTATCGCTTTGTTGCCTTCTAA

Protein sequence : 
MESKGKSVLIVEDDAKIRQLVKLYLEKEGYEALEAEDGEDALDKFKQFDPCLVILDLMLPKLSGEEVCTMIRSDLKSTVP
IIMLTAKVEEAERIQGLKMGADDYVTKPFSPQELVTRVEVVLRRTAQRCRKITYRGLTLKPLKGEIHYKGESIILTHHEF
RLLYFLMSHANQILTREQIMEELYPHQEKIVTERTVDVHIGKLREKLRYDGNSEIIETVRGMGYRFVAF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-17 41
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-16 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 2e-20 42
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 2e-20 42
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 2e-20 42
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 2e-20 42
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 2e-20 42
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 2e-20 42
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 2e-20 42
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 2e-20 42
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene2815. Protein 2e-21 42
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010410.6002989.p0 Protein 9e-27 41
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010400.5986590.p0 Protein 1e-25 41
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_011595.7057856.p0 Protein 9e-27 41
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002745.1124361.p0 Protein 7e-24 41
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009782.5559369.p0 Protein 7e-24 41
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3237708.p0 Protein 7e-24 41
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003749.p0 Protein 8e-24 41
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859905.p0 Protein 6e-24 41
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121668.p0 Protein 7e-24 41
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_009641.5332272.p0 Protein 7e-24 41
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614421.p0 Protein 7e-24 41
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914279.p0 Protein 7e-24 41
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794472.p0 Protein 5e-24 41
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP004022.1.gene1676. Protein 8e-24 41
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE015929.1.gene1106. Protein 3e-15 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desaci_3980 YP_006468178.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 8e-18 41