Gene Information

Name : Desaci_3367 (Desaci_3367)
Accession : YP_006467594.1
Strain : Desulfosporosinus acidiphilus SJ4
Genome accession: NC_018068
Putative virulence/resistance : Virulence
Product : type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3502686 - 3504341 bp
Length : 1656 bp
Strand : -
Note : PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein

DNA sequence : 
ATGATGAACAATTCTTATTTAAGCTTTCAAGAGCTTACTGATGAATTAAAAATGCTATTGGCTGAGGATAGCGGCGGAGA
CGATCTTAGACGGAGCGGATTCTTAGCTCAAGAAGAGACGTTGGATGAGGTGCTGCGAAAGTTCTTGGGTATTCCTGAGG
TTTCGCTGACTCAAGTCACATTTGACCCGGAGGTTGTTCGTTTAATTCCTGAAGAAACGGCACGTCGTTATACCCTTATA
CCCTATCAATGTCACGATGGAATCTTAAACGTTGCTATGTCAGACCCTACAAATGAACAGGCACTACGAACGATTCGGAT
CATGACCGGAATGGAAATTGTTCCGTTTTATGCACGGAAAGAGGATATACAAACCGCCATCCGCCAGCATTTGACGGTAG
AACAATCTGTGGCTCAATTAACCCATCTTACGGATCAGTTCCATCGAGAAATGAACGCTGGGAAAGAAACTTCGGAATCT
ATTAGCTGGGAAGAAGATGCTCCGACCCTCAGATTAGTGTACTCCCTGCTTCAAGAGGCAGTGATTGAGGCAGTCAGTGA
TATTCACTGGGAACCGCATCAGAATGATTTTGTAGTTCGTTATCGCATTGACGGTAAACTCATCAAAAAACATACTCTCT
CGAGCCAAATGGCTCGAACGGTTATTTCTTCCCTGAAGGTAATGTCTAATATGGATGTTGCTGAACGGAGGATTCCCCAG
GACGGGCGAATGTCTTTTAGTGCCGGGTCCCGGCGTGTTGATTTGCGTATGTCTTCCTTGCCGACGGTTCATGGAGAGAA
AATTGTCGTCCGTATTCTTGATCCTGAGATGGCACAGCGTTCTTTAGAAGAACTGGGGATGCGTTCGGAGGTTAAAGCAG
GAGTTCAAGGGTTATTGAAGCATCCGAATGGTTTGATTTTAGTGGTCGGCCCTACCGGTAGCGGTAAAACGACAACCCTT
TATGCACTTCTGCGCGAATTAAATGCTGAGGAGCAGAACATTATCTCAATTGAGGAGCCTGTTGAATATCAACTTCCGGG
GATTAACCAGGTCCAGGTCAATCTCCCGGCGGGACTTAGTTTTGCAGTTGGCTTGAGGCATATTTTGCGGCAGGATCCCG
ATGTTATTATGATTGGCGAGATACGCGATGAAGAAACGGCTCGGATTGCAATTACCGCTTCTCTGACGGGCCACTTAGTA
CTGTCTACGCTGCATACCAATACGGCTGCTGAAGCTTTAGTTCGTCTCTTGGATATGGGTATCGAACCGTATCTCCTGGC
TTCCGCTGTAACAGGTGTCCTCTCACAACGCCTGGTACGTCGCTTATGTGACGTTTGCAAGAAGAGTTCCAACGTTTCAG
ACATAGAAAAGAAAGCCCTTCGGTTACCGGCTGCAATCAAGCAGTTGTATCATTCGCAGGGATGTCCTAAATGCTTGGGA
ATCGGGTTTAGAGGAAGAATCGGTATTCATGAGTTTTTGCCTTATAATCAGGAAATTAGGGAACTTATTCTTGCCCGGCA
CAATTCTCAGGATATAGAACGACAAGCAACTCTATCTGGTATGTTGACGATTTATGAAGATGGTCTTTTGAAGGTTGCCC
AAGGTTTAACAACCATTGAAGAAGTGCTTTTTACGACTTCTGAAACAGAAGGTTAA

Protein sequence : 
MMNNSYLSFQELTDELKMLLAEDSGGDDLRRSGFLAQEETLDEVLRKFLGIPEVSLTQVTFDPEVVRLIPEETARRYTLI
PYQCHDGILNVAMSDPTNEQALRTIRIMTGMEIVPFYARKEDIQTAIRQHLTVEQSVAQLTHLTDQFHREMNAGKETSES
ISWEEDAPTLRLVYSLLQEAVIEAVSDIHWEPHQNDFVVRYRIDGKLIKKHTLSSQMARTVISSLKVMSNMDVAERRIPQ
DGRMSFSAGSRRVDLRMSSLPTVHGEKIVVRILDPEMAQRSLEELGMRSEVKAGVQGLLKHPNGLILVVGPTGSGKTTTL
YALLRELNAEEQNIISIEEPVEYQLPGINQVQVNLPAGLSFAVGLRHILRQDPDVIMIGEIRDEETARIAITASLTGHLV
LSTLHTNTAAEALVRLLDMGIEPYLLASAVTGVLSQRLVRRLCDVCKKSSNVSDIEKKALRLPAAIKQLYHSQGCPKCLG
IGFRGRIGIHEFLPYNQEIRELILARHNSQDIERQATLSGMLTIYEDGLLKVAQGLTTIEEVLFTTSETEG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspE YP_854406.1 type II secretion protein GspE Not tested PAI I APEC-O1 Protein 9e-88 42
gspE CAE85233.1 GspE, hypothetical type II secretion protein Not tested PAI V 536 Protein 7e-88 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desaci_3367 YP_006467594.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG0182 Protein 6e-87 49
Desaci_3367 YP_006467594.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG2426 Protein 8e-79 48
Desaci_3367 YP_006467594.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG1876 Protein 2e-83 47
Desaci_3367 YP_006467594.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG0233 Protein 1e-73 44
Desaci_3367 YP_006467594.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG2048 Protein 5e-87 42
Desaci_3367 YP_006467594.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG1880 Protein 6e-84 41
Desaci_3367 YP_006467594.1 type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB VFG0112 Protein 7e-78 41