Gene Information

Name : A458_21440 (A458_21440)
Accession : YP_006459924.1
Strain : Pseudomonas stutzeri CCUG 29243
Genome accession: NC_018028
Putative virulence/resistance : Virulence
Product : transcriptional activator CopR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4628567 - 4629247 bp
Length : 681 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAAGCTTCTTGTTGCTGAAGACGAGCCGAAAACAGGCACCTACCTACAGCAGGGGCTCACGGAGGCCGGCTTCACTGT
CGATCGAGTAGAGAACGGGACTGATGCTGCTCAGCATGCGCTTCACGGGGAATACGACCTGCTCATCTTAGATGTGATGA
TGCCTGGCTTGGATGGGTGGCAGGTTTTAAAGAATGTCCGCGCTGCCGGTAATGACGTTCCAGTGCTATTCCTTACCGCC
CGAGACGGGGTTCAGGATCGAGTAAAGGGATTGGAGTTGGGCGCTGATGATTATCTCATCAAGCCGTTTGCTTTCTCCGA
ACTGCTTGCCAGGATACGCACGCTGCTTCGCCGCGGCAGCCATGCTCCCAACCAAACGATACTCAAGCTCCTCGACCTTG
AGATGGACTTGCTGAGACGACGGGTTACGCGATCGGGGAAACGCATAGACCTAACTGCAAAGGAATTCGCACTTCTTGAG
CTATTGCTTAGGCGTCGCGGGGAAGTGCTCTCAAAGTCACTTATCGCCTCCCAAGTATGGGACATGAACTTCGATAGCGA
TACCAATGTAATCGAGGTGGCGGTACGCCGGTTAAGGGCAAAGATTGATGATGAGTTCGAGCCGAAGCTGATACAAACTG
CTCGCGGAATGGGCTATCTGATCGAGGCGCCAGGCTTTTAA

Protein sequence : 
MKLLVAEDEPKTGTYLQQGLTEAGFTVDRVENGTDAAQHALHGEYDLLILDVMMPGLDGWQVLKNVRAAGNDVPVLFLTA
RDGVQDRVKGLELGADDYLIKPFAFSELLARIRTLLRRGSHAPNQTILKLLDLEMDLLRRRVTRSGKRIDLTAKEFALLE
LLLRRRGEVLSKSLIASQVWDMNFDSDTNVIEVAVRRLRAKIDDEFEPKLIQTARGMGYLIEAPGF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-52 57
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 4e-51 56

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A458_21440 YP_006459924.1 transcriptional activator CopR BAC0638 Protein 2e-73 82
A458_21440 YP_006459924.1 transcriptional activator CopR BAC0083 Protein 2e-73 79
A458_21440 YP_006459924.1 transcriptional activator CopR BAC0197 Protein 2e-58 64
A458_21440 YP_006459924.1 transcriptional activator CopR BAC0308 Protein 8e-61 63
A458_21440 YP_006459924.1 transcriptional activator CopR BAC0111 Protein 8e-63 62
A458_21440 YP_006459924.1 transcriptional activator CopR BAC0347 Protein 3e-55 57
A458_21440 YP_006459924.1 transcriptional activator CopR BAC0125 Protein 1e-55 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A458_21440 YP_006459924.1 transcriptional activator CopR VFG0596 Protein 2e-52 57
A458_21440 YP_006459924.1 transcriptional activator CopR VFG1390 Protein 1e-35 44
A458_21440 YP_006459924.1 transcriptional activator CopR VFG1386 Protein 2e-33 43
A458_21440 YP_006459924.1 transcriptional activator CopR VFG1389 Protein 8e-30 42