Gene Information

Name : A458_17275 (A458_17275)
Accession : YP_006459103.1
Strain : Pseudomonas stutzeri CCUG 29243
Genome accession: NC_018028
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3715911 - 3716570 bp
Length : 660 bp
Strand : +
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCGCATTCTGCTGGTGGAAGACGATCGCGCCCTCGGCGAGGGCATCCGCACCGCACTCAAGCCCGAGGGCTACACGGT
GGACTGGCTGCAGGACGGCGCCAGCGCGCTGCATGCGCTGAGCCACGAGAGCTTCGAGCTGGCCATCCTCGACCTCGGTC
TGCCGCGTATGGACGGTCTGGAAGTGCTCAAGCGCCTGCGCGCCAGCGCCAACCCGATCCCGGTGCTGGTACTCACCGCG
CGCGATGCCACCAGCGACCGCATCGCCGGGCTGGATGCCGGCGCCGACGACTACCTGGTCAAGCCGTTCGACGTCGCCGA
ACTCAAGGCCCGCCTCCGCGCTCTGCTCCGGCGCAGCTTCAATCGCCCTGAGCCGGTACTGGAGTACCGCGGCATCCTGC
TCGACCCGGTCAATCAGCAGGTCAGCTACCAGGGCACCCCGATCAACCTGCCGCGCAAGGAGTTCGTCCTGCTGCATGAG
CTGATCGCCCAGCCCGGTCGCGTGCTGACCCGCGATCGGCTGCAGCAGGTGCTCTACGGCTGGGACGAGGAAGTCGAGAG
CAACGCGCTGGAGGTGCATATCCATCACCTGCGCAAGAAATTCTTCCCCGAACTGATCCGCACCGTGCGCGGGGTCGGCT
ATCTGGTGGACAAATGCTGA

Protein sequence : 
MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALSHESFELAILDLGLPRMDGLEVLKRLRASANPIPVLVLTA
RDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSFNRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHE
LIAQPGRVLTRDRLQQVLYGWDEEVESNALEVHIHHLRKKFFPELIRTVRGVGYLVDKC

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-34 47
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-30 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 5e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A458_17275 YP_006459103.1 DNA-binding response regulator BAC0487 Protein 5e-34 47
A458_17275 YP_006459103.1 DNA-binding response regulator BAC0197 Protein 4e-31 43
A458_17275 YP_006459103.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 9e-27 41
A458_17275 YP_006459103.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 9e-27 41
A458_17275 YP_006459103.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 9e-27 41
A458_17275 YP_006459103.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 9e-27 41
A458_17275 YP_006459103.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 9e-27 41
A458_17275 YP_006459103.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 9e-27 41
A458_17275 YP_006459103.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 9e-27 41
A458_17275 YP_006459103.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 9e-27 41
A458_17275 YP_006459103.1 DNA-binding response regulator BAC0308 Protein 1e-27 41
A458_17275 YP_006459103.1 DNA-binding response regulator BAC0288 Protein 4e-26 41
A458_17275 YP_006459103.1 DNA-binding response regulator Y16952.3.orf35.gene. Protein 3e-26 41
A458_17275 YP_006459103.1 DNA-binding response regulator U82965.2.orf14.gene. Protein 4e-25 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A458_17275 YP_006459103.1 DNA-binding response regulator VFG1390 Protein 5e-36 48
A458_17275 YP_006459103.1 DNA-binding response regulator VFG0473 Protein 8e-35 47
A458_17275 YP_006459103.1 DNA-binding response regulator VFG0596 Protein 3e-30 42