Gene Information

Name : A458_14240 (A458_14240)
Accession : YP_006458500.1
Strain : Pseudomonas stutzeri CCUG 29243
Genome accession: NC_018028
Putative virulence/resistance : Virulence
Product : transcriptional activator CopR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3103226 - 3103909 bp
Length : 684 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAAATTGCTGGTCGCTGAAGACGAACCGAAAACCGGCATGTACCTGCAGCAGGGGCTGAGCGAGGCCGGCTTCACCGT
CGACCGTGTTACCAGCGGCACCGACGCGCTGCAGCATGTGCTGAGTACGCCCTATGACCTGCTGATTCTCGACGTGATGA
TGCCGGGCCTGGATGGCTGGGAAGTGTTGCGCCTGGTGCGGGCGTCGGGCAACGAGGTGCCGGTGCTGTTTCTGACCGCG
CGCGATCGCGTCGAGGATCGAGTCAAGGGGCTGGAGCTGGGCGCCGACGATTATCTGGTCAAGCCGTTCGCGTTCTCCGA
ACTGCTGGCGCGCGTGCGCACCCTGCTGCGACGAGGCAACGCGGCGGCCTTGCAGACCCAGTTGAAGATCGCCGATCTGG
AGGTCGATCTGCTCAAGCGCCGCGCGGTGCGGGCTGGCCAGCGTATCGACCTGACTGCCAAGGAATTCGCCCTGCTGGAA
CTGCTGCTGCGTCGACGCGGCGAGGTGCTGCCCAAGTCGCTGATCGCTTCCCAGGTGTGGGACATGAATTTCGACAGTGA
CACCAACGTCATCGAGGTGGCGATCCGCCGCTTGCGGGTGAAGATCGACGACGGCTTCGAGCCCAAGCTGATCCACACCG
CACGGGGCATGGGGTACATGCTCGACGAGCCGGACGCGCCATGA

Protein sequence : 
MKLLVAEDEPKTGMYLQQGLSEAGFTVDRVTSGTDALQHVLSTPYDLLILDVMMPGLDGWEVLRLVRASGNEVPVLFLTA
RDRVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGNAAALQTQLKIADLEVDLLKRRAVRAGQRIDLTAKEFALLE
LLLRRRGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRVKIDDGFEPKLIHTARGMGYMLDEPDAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 5e-54 56
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-53 54

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A458_14240 YP_006458500.1 transcriptional activator CopR BAC0638 Protein 4e-83 85
A458_14240 YP_006458500.1 transcriptional activator CopR BAC0083 Protein 8e-81 80
A458_14240 YP_006458500.1 transcriptional activator CopR BAC0197 Protein 5e-65 66
A458_14240 YP_006458500.1 transcriptional activator CopR BAC0111 Protein 2e-68 62
A458_14240 YP_006458500.1 transcriptional activator CopR BAC0308 Protein 8e-63 62
A458_14240 YP_006458500.1 transcriptional activator CopR BAC0125 Protein 2e-61 62
A458_14240 YP_006458500.1 transcriptional activator CopR BAC0347 Protein 2e-62 58
A458_14240 YP_006458500.1 transcriptional activator CopR NC_002516.2.879194.p Protein 8e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A458_14240 YP_006458500.1 transcriptional activator CopR VFG0596 Protein 2e-54 56
A458_14240 YP_006458500.1 transcriptional activator CopR VFG1390 Protein 4e-39 46
A458_14240 YP_006458500.1 transcriptional activator CopR VFG1386 Protein 2e-37 45
A458_14240 YP_006458500.1 transcriptional activator CopR VFG1389 Protein 2e-35 45