Gene Information

Name : A458_01080 (A458_01080)
Accession : YP_006455903.1
Strain : Pseudomonas stutzeri CCUG 29243
Genome accession: NC_018028
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein TctD
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 220498 - 221169 bp
Length : 672 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGCGAATTCTTCTGGTCGAGGACCACCCCCAGCTGGCCGAAAGCGTGGCGCAGGCAATGCGCGCCGCCGGCTGGACCGT
GGACCTGCTGCACGACGGCGTCGCCGCCGACCTGGCGCTGGCCAGCGAGGACTACGCGCTGGCGATCCTCGACGTCGGCC
TGCCACGGCTCGACGGCTTTCAGGTGCTGGCGCGCCTGCGCGAGCGCGGCAAGACGCTGCCGGTACTGATGCTCACCGCA
CGCGGCGAGGTCAGTGACCGCGTGCACGGGCTCAACCTCGGCGCCGACGACTACCTGGCCAAGCCGTTCGAACTGTCCGA
GCTGGAAGCACGGGTCAAGGCGCTGCTGCGGCGCAGCGTCGGCGGCGGCGAACGCCAGCAGCGTTGCGGCGCACTGGTCT
ACGATCTGGATGCGCGGCGCTTCAGCCTGGCCGACGAGCCACTGACGCTGACCTCCCGCGAGCAGGGCGTGCTGGAAGCG
CTGATCGCCCGCCCCGGTCGGGTGATGAGCAAGGATCAGCTGGCCGCCCAGGTATTCGGCCTGGACGAGGACGCCAGCGC
CGACGCCATCGAGATCTACATCCACCGTCTGCGCAAGAAGCTCGAGGGCCAGCCGGTACGCATCGTCACCTTCCGCGGCC
TCGGCTACCTGCTCGAGGCGCTCGATGGCTGA

Protein sequence : 
MRILLVEDHPQLAESVAQAMRAAGWTVDLLHDGVAADLALASEDYALAILDVGLPRLDGFQVLARLRERGKTLPVLMLTA
RGEVSDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVGGGERQQRCGALVYDLDARRFSLADEPLTLTSREQGVLEA
LIARPGRVMSKDQLAAQVFGLDEDASADAIEIYIHRLRKKLEGQPVRIVTFRGLGYLLEALDG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 9e-28 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A458_01080 YP_006455903.1 transcriptional regulatory protein TctD BAC0083 Protein 4e-35 45
A458_01080 YP_006455903.1 transcriptional regulatory protein TctD BAC0638 Protein 1e-32 44
A458_01080 YP_006455903.1 transcriptional regulatory protein TctD BAC0111 Protein 6e-35 41
A458_01080 YP_006455903.1 transcriptional regulatory protein TctD BAC0197 Protein 2e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
A458_01080 YP_006455903.1 transcriptional regulatory protein TctD VFG1390 Protein 8e-33 44
A458_01080 YP_006455903.1 transcriptional regulatory protein TctD VFG0596 Protein 3e-28 42
A458_01080 YP_006455903.1 transcriptional regulatory protein TctD VFG1389 Protein 2e-24 42