Gene Information

Name : Mycch_4316 (Mycch_4316)
Accession : YP_006454705.1
Strain : Mycobacterium chubuense NBB4
Genome accession: NC_018027
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4526546 - 4527391 bp
Length : 846 bp
Strand : -
Note : PFAM: Integrase core domain; manually curated; non-canonical start codon

DNA sequence :
CTGTCACTGACGTGGGATGTCTACTACGACACCAAGACCCGTCCGCCCTCAACGCGGGCAGTCCGCGACGCCGAGCTGGG
GCCAGCCCTGCGCAAGCTCTGGGAGGACAATTACCGCGTCTACGGGGTCCGCAAGCTGTGGAAAGCCGCACGTCGAGCCG
GCCACGGCATCGGCCGTGATCAGGTCGGGCGCCTGATGCGCCGCCTCGGCATCGAAGGCGTCCGGCGCGGCAATCGGGTC
AAGACCACCGCAGCCGACACGGCCGCAGCGCGGCATCCCGATCTCGTCAACCGCCGATTCAGCGCATCGGCGCCCAACCA
GTTGTGGGTGACCGACCTGACCTACGTCCCGACCTGGTCGGGGGTGGCCTACGTCTGCTTCATCGTCGACGCGTTCTCCC
GGACGATCGTCGGGTGGCGGGTGGCATCGAACATGCGCACCACCATGGTGCTCGACGCGGTGGAGATGGCGCGCTGGTCA
CGCGGAAACACGCTGCCGGGCTTGCGCTGTCACTCCGATGCCGGCTCGCAGTTCACCTCCATCCGCTACGGCGAGCGCCT
CGCTGAGATCGGTGCGCTGCCTTCGATCGGATCCGTCGGCGACAGCTTCGACAACGCCCTCGCCGAAACGGTGAACGGAT
ACTACAAAGCCGAGCTGATCTACGGGCCGGCCCGCACCGAGCCGTGGAAGACGGTCGAGGACGTCGAATTGGCCACCCTG
AGCTGGGTGTACTGGCACAACACCGCCCGCCTGCACAGCTACCTCGACGACGTCGCACCCACCGAATTCGAAGCCGCGTT
CTACGATGCCCAACGGATCGACCAACCCCTGGTCGAAATCCAATAG

Protein sequence :
MSLTWDVYYDTKTRPPSTRAVRDAELGPALRKLWEDNYRVYGVRKLWKAARRAGHGIGRDQVGRLMRRLGIEGVRRGNRV
KTTAADTAAARHPDLVNRRFSASAPNQLWVTDLTYVPTWSGVAYVCFIVDAFSRTIVGWRVASNMRTTMVLDAVEMARWS
RGNTLPGLRCHSDAGSQFTSIRYGERLAEIGALPSIGSVGDSFDNALAETVNGYYKAELIYGPARTEPWKTVEDVELATL
SWVYWHNTARLHSYLDDVAPTEFEAAFYDAQRIDQPLVEIQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 3e-42 52
tnpC AAD44736.1 TnpC Not tested SHI-2 Protein 1e-40 52
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 4e-42 51
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 7e-48 50
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 5e-49 50
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 6e-49 50
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 2e-38 50
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-47 49
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 3e-47 49
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 3e-47 49
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 3e-47 49
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-47 49
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 7e-49 49
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-49 47
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-49 47
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-49 47
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 3e-49 47
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-49 46
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-49 46
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 9e-50 46
Z1221 NP_286756.1 transposase Not tested TAI Protein 8e-50 46
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 4e-49 46
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 3e-33 46
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 2e-46 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mycch_4316 YP_006454705.1 transposase VFG1602 Protein 1e-46 45