Gene Information

Name : Mycch_0364 (Mycch_0364)
Accession : YP_006450866.1
Strain : Mycobacterium chubuense NBB4
Genome accession: NC_018027
Putative virulence/resistance : Resistance
Product : ABC-type antimicrobial peptide transport system, ATPase component
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 370251 - 371069 bp
Length : 819 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence :
GTGACGCTGCACGTCACCATGACCGATGTCGTTCGGTCCTATCGCGCCGGCGGGCAGACCGTCCGCGCGCTGGACAACGT
CAGCCTGCACCTGCACGGCGGCGAATTCGTCTCGGTGGTCGGGCCGTCCGGTGCAGGCAAGAGCACACTGCTGCACCTGC
TCGGCGCCCTCGATGCGCCCGACTCGGGGTCGATCCGCGTCAACGACGCCGAGCTCGCCGCCATGAGCGACGACGAGCAG
GCCCGGTTCCGCCGCCATCAGGTCGGGTTCATCTTCCAGTTCTTCAACCTGCTGCCCACGCTGACGGCGTGGGAGAACGT
CGCCGTACCCGCTCTGCTCGACGGGCGGGGCCTGCGCGACGTCCGCAGCAGGGCCCTCCAGCTACTGGATCTGGTGGGAT
TGGGACGACGCGCCCACCATCGCCCGTCGGAGCTGTCCGGTGGGCAAATGCAACGGGTCGCCGTGGCCCGCGCGCTCCTG
ATGGACCCACCGTTGATCCTGGCCGACGAACCCACGGGGAATCTGGATTCCGTGACGGGGGCAGCGGTCCTCGAGCTGCT
GTCTCACGTCGCCCACGACGGAGACCGTGCCGTGCTGATGGTCACCCACAACCTGGAGGCCGCCGCAACGACCGACCGGG
TGATCACCCTGCACGACGGCGTCGTCACCGCCGACGTGCGCCCCGACACGCCGACCGCCACCGGCCGCCACGCACGCGTC
GGTCTCGCCGACGCGGTGACCGATGTGATCGAAGACCTGCGGTTCGAATTCGCCGATGACATGGCGCCGGCCGCCGGTCC
GACGTCGGATCCTCTGTAG

Protein sequence :
MTLHVTMTDVVRSYRAGGQTVRALDNVSLHLHGGEFVSVVGPSGAGKSTLLHLLGALDAPDSGSIRVNDAELAAMSDDEQ
ARFRRHQVGFIFQFFNLLPTLTAWENVAVPALLDGRGLRDVRSRALQLLDLVGLGRRAHHRPSELSGGQMQRVAVARALL
MDPPLILADEPTGNLDSVTGAAVLELLSHVAHDGDRAVLMVTHNLEAAATTDRVITLHDGVVTADVRPDTPTATGRHARV
GLADAVTDVIEDLRFEFADDMAPAAGPTSDPL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-34 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-36 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-36 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-36 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mycch_0364 YP_006450866.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene598.p Protein 9e-44 48
Mycch_0364 YP_006450866.1 ABC-type antimicrobial peptide transport system, ATPase component NC_008702.1.4606598. Protein 3e-41 47
Mycch_0364 YP_006450866.1 ABC-type antimicrobial peptide transport system, ATPase component NC_012469.1.7686878. Protein 2e-47 46
Mycch_0364 YP_006450866.1 ABC-type antimicrobial peptide transport system, ATPase component CP001581.1.gene798.p Protein 5e-44 44