Gene Information

Name : Desti_3124 (Desti_3124)
Accession : YP_006448050.1
Strain : Desulfomonile tiedjei DSM 6799
Genome accession: NC_018025
Putative virulence/resistance : Virulence
Product : general secretory pathway protein E/type IV-A pilus assembly ATPase PilB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3672258 - 3673952 bp
Length : 1695 bp
Strand : -
Note : PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein; TIGRFAM: type IV-A pilus assembly ATPase PilB; general secretory pathway protein E

DNA sequence : 
ATGAAAGATCGTATTGGAGAAATGCTGCTGCGCGCAGGTATTATAGATGAGGAAAAGCTCGAGCGAGCCACAGATTACCA
GCGCAATCAGGGCGGAAAAATTTACTCGGCACTTATTAAGCTCGACCTGGTCGATGAAGACGACGTTGTAGAATTTCTCT
CTCGCCAACTTGGTCTTCCTACCGTTTCTCTTGATGAAATTGATGTAGATACCGATGCGGTTAAACTAATTGCTGCGGAA
AAAGCCCAAAAGTATATGGCGATTCCGTACAGCCAAGTTAACTCGACATTATATGTGGCGATGGCGGATCCAACGGACTT
GAATGCCATCGATGACATCAAGTTCATGACGAACATGTCTATCGAAGTCAGTATCGCCACAGAGTCTCAGATCAAGAAAT
CGCTGGATGCGTTTTACGATGCGGGACTGCAGACCGAGAATGTGCTGGAAGGGTTCGACGACGAAGATCTGGAAGCGGTT
GGGGAAATCGCCGAATTAGATGCAAACGATGCCGCCAAAATGGCCGAAGAGGCACCGGTTGTCAAATTGGTCAACTATAT
CCTTCGAGAGGCAATTAACAAGCGGGCAAGCGATATACACGTCGAACCATATGAAAAAGTTCTCAGAGTGCGATTGCGTA
TTGACGGATCTCTGTACGAGATCGTCAAGCCTCCTATGAAGCTCAAGAATCCCATGGTCAGCCGCATCAAGATCATGGCC
CGCCTGGACATTGCCGAAAGGCGATTGCCCCAGGACGGCCGAATCAAGCTGAAACTGGGCAAAGGCCGGGATATGGATTT
CCGCGTGTCCGTGCTTCCCACGCTTTTCGGGGAAAAAGTGGTCATGCGGCTCCTGGATAAATCCAATCTGCAATTGGATA
TGACCAAACTCGGATTTGAAGAAAAGCCTCTGAGGAATTTCAAGGAAGCTATCCATAAACCTTTTGGTATGGTGCTGGTC
ACGGGACCTACAGGTTCCGGAAAAACAACCACATTGTACAGCGCACTGTCCGAACTGAACTCTCCGGATGTAAACGTCTC
GACTGCGGAAGATCCGGTCGAGTTCAACCTGCACGGGATCAACCAGGTCCAGATGCATGAAGAGATAGGGCTCACCTTTG
CTTCATCCCTGAGATCCTTCCTCAGGCAGGACCCGGACATTATCATGGTCGGAGAGATCCGGGACTTCGAAACCGCTGAA
ATTGCCGTTAAAGCCGCTCTAACAGGCCACCTTGTGCTCTCGACTCTACACACGAACGATGCGCCGCAGACCATCAACCG
ACTGCTCAACATGGGTGTCGAACCTTTCTTGGTGGCGAGCTCAGTCAATGCCATCGTTGCCCAGAGGCTTGCAAGAAGAA
TATGCAGCCAGTGCAAAATGGAAATAGATCCTCCGGCAGAGGCGCTGCGAGACCTCGGTGTGAAAATGGAAGACATAGGC
ACTTTTCCCATTTACCAGGGGACCGGTTGCGCAATGTGCGCCAATACCGGGTTTAAGGGGAGAGTCGCTCTGTACGAGGT
TATGCCCATTACCGACGAACTTAAGGAACTCATCCTGGCCGGAGCTTCCGCGTTGGAACTCAAGAGAGAGGCAATCCGAC
TGGGGATGGATACCCTGCGCATGGCGGGGGTGAACAAGCTGAAGGAAGGTGTCACCACCATAAATGAGGTGGCCCGGGTG
ACAATGCCTGACTGA

Protein sequence : 
MKDRIGEMLLRAGIIDEEKLERATDYQRNQGGKIYSALIKLDLVDEDDVVEFLSRQLGLPTVSLDEIDVDTDAVKLIAAE
KAQKYMAIPYSQVNSTLYVAMADPTDLNAIDDIKFMTNMSIEVSIATESQIKKSLDAFYDAGLQTENVLEGFDDEDLEAV
GEIAELDANDAAKMAEEAPVVKLVNYILREAINKRASDIHVEPYEKVLRVRLRIDGSLYEIVKPPMKLKNPMVSRIKIMA
RLDIAERRLPQDGRIKLKLGKGRDMDFRVSVLPTLFGEKVVMRLLDKSNLQLDMTKLGFEEKPLRNFKEAIHKPFGMVLV
TGPTGSGKTTTLYSALSELNSPDVNVSTAEDPVEFNLHGINQVQMHEEIGLTFASSLRSFLRQDPDIIMVGEIRDFETAE
IAVKAALTGHLVLSTLHTNDAPQTINRLLNMGVEPFLVASSVNAIVAQRLARRICSQCKMEIDPPAEALRDLGVKMEDIG
TFPIYQGTGCAMCANTGFKGRVALYEVMPITDELKELILAGASALELKREAIRLGMDTLRMAGVNKLKEGVTTINEVARV
TMPD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
gspE YP_854406.1 type II secretion protein GspE Not tested PAI I APEC-O1 Protein 4e-97 43
gspE CAE85233.1 GspE, hypothetical type II secretion protein Not tested PAI V 536 Protein 3e-97 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desti_3124 YP_006448050.1 general secretory pathway protein E/type IV-A pilus assembly ATPase PilB VFG2426 Protein 3e-101 50
Desti_3124 YP_006448050.1 general secretory pathway protein E/type IV-A pilus assembly ATPase PilB VFG1880 Protein 6e-113 48
Desti_3124 YP_006448050.1 general secretory pathway protein E/type IV-A pilus assembly ATPase PilB VFG0112 Protein 9e-116 47
Desti_3124 YP_006448050.1 general secretory pathway protein E/type IV-A pilus assembly ATPase PilB VFG0182 Protein 3e-92 44
Desti_3124 YP_006448050.1 general secretory pathway protein E/type IV-A pilus assembly ATPase PilB VFG0233 Protein 5e-105 44
Desti_3124 YP_006448050.1 general secretory pathway protein E/type IV-A pilus assembly ATPase PilB VFG2048 Protein 5e-98 43