Gene Information

Name : Desti_3121 (Desti_3121)
Accession : YP_006448047.1
Strain : Desulfomonile tiedjei DSM 6799
Genome accession: NC_018025
Putative virulence/resistance : Virulence
Product : lysyl-tRNA synthetase (class II)
Function : -
COG functional category : -
COG ID : -
EC number : 6.1.1.6
Position : 3668053 - 3669564 bp
Length : 1512 bp
Strand : -
Note : PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial

DNA sequence :
TTGCAGGAACATTCTACAGATACAAAAAAAACTCAGGTGTCCTCATTAACCGAGGTCAGGATACAAAAAGTCCAGGAGCT
TCAGGATCTGGGAATACCTGCGTATTCCGTGGGCTTTGTTCCCAATATCAATTCCTCGGTATTCAAATCGAATTTTGCTC
ACGTGGAAGAACTGGAAGAGTCCGCCGATCCCGTCAAAATGGTCGGTCGCATCATGGCGATCCGTCTTTTGGGAAAAGCC
GCCTTCTTGAGACTCAGAGACGCTGCGGGCGATTTCCAGGCATATGCGTCGCGAGATCATGTCGGAACCGACAAGTATAA
GATGCTGAAGAAGCTTGATGTCGGTGACATCATCGGAACCGTCGGTCGACCTTTCAGAACACGAACCGGTGAACTGAGTA
TCTTTACCGATGATTTCGCAATACTTTCCAAATCATTGAGACCGCTTCCCGAGAAGTGGCACGGACTTTCGGATGTGGAG
ATCCGGTATCGACAACGGTATTTGGATCTCATCGTGAATACTGCTGCTCGAGATGTCGTCAGAACCCGGTCGAGGATTAT
TTCGTACATACGGCGTTTTCTGGTAGAACGGGAGTTCCTGGAAGTTGAAACACCTATGATGCAGGCGATTCCCGGCGGCG
CCACGGCAAAACCGTTTGAGACATTTCATCACGCCCTGGGCCGAAAACTGTATTTGCGTATTGCGCCTGAGTTGTATCTA
AAACGGCTGCTGGTCGGCGGATTCGATCGAGTATTTGAAATAAACCGCAATTTCCGGAATGAAGGGATTTCCACGCAGCA
CAATCCTGAGTTCACGATGCTGGAGTTCTATCAGGCTTATGCCACGTACGAAGATCTGATGGCACTCACGGAAGAATTGC
TGTCGTCGCTCGCACGTGAAATAATCGGCGGGCACGAATTCTCTTACGGTGAAAGAACCGTCAACCTTGCGCCTCCCTGG
GAGCGCATCACCGTGAAGGAAGCCCTGCTGAAGTACGGTGGATTCTCTGTGGAGGACATCGAGGATAGAAACGCGCTGTT
CATCAAGGCGGTCGAACTCGGTCTGGAAGTCAACAAAGATGAAGGAATCGGAAAACTCTGGATGGCTCTGTTCGATGAGC
TCGTGGAAGACAAGCTCTGGGGACCGATTTTCGTTCACAAATATCCTGTGGAGGTCTCTCCGCTCGCACGGCGGAATGAC
GAAGACCCCACGGTAACGGACCGATTTGAGCTCTATATTTGCGGTCGAGAGTTAGCTAATGCTTTCACTGAGTTGACCGA
TCCTCTCGATCAGCGAGGCCGTTTTGAAGAACAGGTGCGCGCACGAGCAGCCGGAGACGAGGAAGCGCATTTTCTGGACG
AAGATTTTTTGAGAGCCCTGGAATACGGGATGCCGCCTGCTGCCGGTGAAGGCATAGGTATCGATCGTCTGGTGATGCTG
CTCACGGATTCTCAGTCGATTCGGGATGTAATCTTGTTTCCGCACATGAGACCCGAAAAAGGGATCGGATGA

Protein sequence :
MQEHSTDTKKTQVSSLTEVRIQKVQELQDLGIPAYSVGFVPNINSSVFKSNFAHVEELEESADPVKMVGRIMAIRLLGKA
AFLRLRDAAGDFQAYASRDHVGTDKYKMLKKLDVGDIIGTVGRPFRTRTGELSIFTDDFAILSKSLRPLPEKWHGLSDVE
IRYRQRYLDLIVNTAARDVVRTRSRIISYIRRFLVEREFLEVETPMMQAIPGGATAKPFETFHHALGRKLYLRIAPELYL
KRLLVGGFDRVFEINRNFRNEGISTQHNPEFTMLEFYQAYATYEDLMALTEELLSSLAREIIGGHEFSYGERTVNLAPPW
ERITVKEALLKYGGFSVEDIEDRNALFIKAVELGLEVNKDEGIGKLWMALFDELVEDKLWGPIFVHKYPVEVSPLARRND
EDPTVTDRFELYICGRELANAFTELTDPLDQRGRFEEQVRARAAGDEEAHFLDEDFLRALEYGMPPAAGEGIGIDRLVML
LTDSQSIRDVILFPHMRPEKGIG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD66193.1 putative lysil-tRNA synthetase LysU Not tested PAI III 536 Protein 2e-115 51
lysS YP_005163386.1 lysyl-tRNA synthetase Not tested Not named Protein 8e-83 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desti_3121 YP_006448047.1 lysyl-tRNA synthetase (class II) VFG1668 Protein 1e-115 51