Gene Information

Name : Mycch_5775 (Mycch_5775)
Accession : YP_006442722.1
Strain :
Genome accession: NC_018022
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 440757 - 441674 bp
Length : 918 bp
Strand : -
Note : PFAM: Integrase core domain; manually curated

DNA sequence :
GTGCGTCGCGCCACTGATGGGCGGACGGCACCTAATCCATCTCCTTCCAGACTTTCCCTCAGCGACCGCAGGCCGAAAGT
AAATTCGACACAAGCAGCCGTAACACCAGACCGATTTCGACACAGCCCCTCTGAGGGGGACCCGTTTGGTGGTCCAGTTG
ATCTGTACCCGTGTTGTTGGTCCACGGTTGTGCAACGTGAGGCCATCCCGGTGGCCAAGTCCACCGTGGAACGGCTGATG
CGGGCCAATGGCTGGCAGGGCGTCCGGCGCCAGCAGAAGGTCCGCACCACCATCGCGGACCCGGCCGCGGTGCGGCCACC
GGATCTGGTGGACCGACAGTTCGGTGTGACTGCTCCCAACACGCTGCTGGTGGCCGACTTCACCTACGTGAAGTTGGTGA
CCGGGATCCTCGTCTACGTGGCGTTCGTCATCGACGCCTACGCCGGGTCGATTGTGGGCTGGGAAGCCTCGGGCTCCAAA
CACACCCGTTTCGTCGAGTCCGCGATCCGCCAGGCCGCCGCGCTCCGCCGTCGTCAGGGCCACCCGATCGAGGACGGCAT
CCATCACAGCGACGCAGGATCGCAGTACACGAGCGTGAGATTCGGTGAAACACTTAGCCTTTCGGGATTGCGCCCGTCGG
TCGGCAGTGTCGGGGATGCGTATGACAACGCGTTGGCCGAGACCACCATCGGGCTCTACAAGAACGAATGCATCCGAGCG
GATTCTCCGTTTCGCCGCGGCCCGCTGCACACCCTGGGCGATGTCGAGTACCTCACCGCCGACTATGTCGCCTGGTTCAA
CCAACAGCGCCTCATGCATCGACTCGGACGCATCCCACCCGCCGAAGCCGAGGCCCGCTACTATTCCGAACTCGTGACCG
ACCAACCGGCCGGCTCACAGAACCCCGAGGGTGCATGA

Protein sequence :
MRRATDGRTAPNPSPSRLSLSDRRPKVNSTQAAVTPDRFRHSPSEGDPFGGPVDLYPCCWSTVVQREAIPVAKSTVERLM
RANGWQGVRRQQKVRTTIADPAAVRPPDLVDRQFGVTAPNTLLVADFTYVKLVTGILVYVAFVIDAYAGSIVGWEASGSK
HTRFVESAIRQAAALRRRQGHPIEDGIHHSDAGSQYTSVRFGETLSLSGLRPSVGSVGDAYDNALAETTIGLYKNECIRA
DSPFRRGPLHTLGDVEYLTADYVAWFNQQRLMHRLGRIPPAEAEARYYSELVTDQPAGSQNPEGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 8e-34 47
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-35 47
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 1e-35 47
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 3e-34 46
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 7e-36 46
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 1e-35 46
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 1e-35 46
Z1221 NP_286756.1 transposase Not tested TAI Protein 9e-36 46
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 8e-36 46
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 3e-35 45
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 3e-35 45
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 3e-35 45
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 7e-35 45
Z1198 NP_286733.1 transposase Not tested TAI Protein 3e-35 45
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-34 45
Z1638 NP_287141.1 transposase Not tested TAI Protein 3e-35 45
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 5e-35 45
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-35 45
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-35 44
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 3e-32 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Mycch_5775 YP_006442722.1 transposase VFG1602 Protein 1e-32 44