Gene Information

Name : Turpa_3529 (Turpa_3529)
Accession : YP_006441672.1
Strain : Turneriella parva DSM 21527
Genome accession: NC_018020
Putative virulence/resistance : Unknown
Product : transposase IS3/IS911 family protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3669724 - 3670119 bp
Length : 396 bp
Strand : -
Note : PFAM: Transposase; InterPro IPR002514; KEGG: nmu:Nmul_A2173 transposase IS3/IS911; PFAM: Transposase IS3/IS911; SPTR: Transposase IS3/IS911

DNA sequence :
ATGAATAATGATAGTACTAAGGCTAAGGTAGAGTTAGTCACAACCGTCCAGCGGCGGCGCAGATGGTCGGTCGCGGAGAA
ACTGGAGATTCTGGTAGAGGCCGAACAGCCCGGTATGAGCATGTCGTATGTGGCCCGAAAACATGGAATCGCAGCGACGC
AGATTTTCAAATGGAAAAAGCTGAAAGAGGCTGGCGCTCTGACGGCTGTTGGCAGCGAAGAGGAAGTATTGCCCGTATCG
CAGGTCAGGCAGCTCCAAGAGCGCATCCGTCGGCTGGAGAGCATTTTGGGTCGTAAGACGGAAGAAGTTGAAATCCTCAA
GGAAGCCGTGCGTATTGGACGCGAAAAAAAACTGATCTCGCACAAGCCATTGCGCGGCATCGAGGGTTTCGAGTGA

Protein sequence :
MNNDSTKAKVELVTTVQRRRRWSVAEKLEILVEAEQPGMSMSYVARKHGIAATQIFKWKKLKEAGALTAVGSEEEVLPVS
QVRQLQERIRRLESILGRKTEEVEILKEAVRIGREKKLISHKPLRGIEGFE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpG AAD44740.1 TnpG Not tested SHI-2 Protein 3e-20 46
unnamed AAL57520.1 IS2 transposase Not tested LEE Protein 3e-20 46
st02 CAC81840.1 ST02 protein Not tested LEE II Protein 3e-20 46
ECO26_5247 YP_003232129.1 insertion sequence 2 OrfA protein Not tested LEE Protein 5e-20 46
S3188 NP_838471.2 insertion sequence 2 OrfA protein Not tested SHI-1 Protein 5e-20 46
S4060 NP_839229.2 insertion sequence 2 OrfA protein Not tested SHI-2 Protein 5e-20 46
SF2984 NP_708758.3 IS2 ORF1 Not tested SHI-1 Protein 7e-20 46
aec50 AAW51733.1 Aec50 Not tested AGI-3 Protein 4e-20 46
S4049 NP_839217.2 insertion sequence 2 OrfA protein Not tested SHI-2 Protein 1e-19 45
SF3709 NP_709448.3 IS2 ORF1 Not tested SHI-2 Protein 2e-19 45
SF3722 NP_709461.3 IS2 ORF1 Not tested SHI-2 Protein 2e-19 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Turpa_3529 YP_006441672.1 transposase IS3/IS911 family protein VFG0648 Protein 2e-20 46
Turpa_3529 YP_006441672.1 transposase IS3/IS911 family protein VFG0609 Protein 7e-20 45
Turpa_3529 YP_006441672.1 transposase IS3/IS911 family protein VFG0622 Protein 7e-20 45