Gene Information

Name : Fleli_0623 (Fleli_0623)
Accession : YP_006432880.1
Strain : Flexibacter litoralis DSM 6794
Genome accession: NC_018018
Putative virulence/resistance : Virulence
Product : chaperone ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 705029 - 707563 bp
Length : 2535 bp
Strand : +
Note : PFAM: AAA domain (Cdc48 subfamily); Clp amino terminal domain; C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA); UvrB/uvrC motif

DNA sequence :
ATGGAAGCCAAATTTTCAGACAGAGTCAAAGAAGTGATTTCTCTAGCTAGAGAAGAGGCTTTGAGGCTTGGACATGATTA
TATAGGCACAGAACATCTATTGCTCGGAATGATACGAGAAGGAGAAGGAAGTGCCATCAATATTTTAAAAAAACTAGGTG
TTACGATAGAAGAACTTAAAGCCGAAATCGAACGCCATTCTCAAGGCACAGCCACCTATAATGTTCGCAATCTTGCCAAT
ATTCCACTCACTCGTCAGGCTGAAAAAGTCTTGAAAATCACATATTTGGAAGCAAAAATTTTTAAAGCTGATTTAATCGG
AACAGAACATTTGCTTTTATCTATTTTGAGAGATGAGGATAGTATTGCTACTCATATTTTAGAAAAATTTAATATTACCT
ACGAAGTAGTAAAAGAAATGCTCCAATATCACACTGACAAACCCATCACTTCGGCTGCTGAAGAAGATGATGATGAAGGA
CGTATTTTTGGTGGTGGAAGAGAGCCGTCTGGTGCAGGTGGAACTCAAGGAAAATCAACCGAAAAATCACGTACTCCTGT
TTTAGATAACTTTGGTAGAGATTTAACAAAGTTTGCCGAAGAAGACAAATTAGACCCAATTATTGGGCGTGAAAAAGAAA
TTGAGCGTGTAGCTCAGATTCTTTCTCGTCGTAAGAAAAACAATCCTATTTTGATAGGTGAACCAGGAGTTGGTAAAACT
GCCATTGCTGAAGGTTTAGCACTTCGAATCGTTCAACGCAAAGTTTCACGTATTCTTTTTGGAAAACGTGTAGTTACACT
TGACCTTGCTTCTCTTGTTGCAGGTACAAAATACCGTGGACAATTTGAAGAGCGTATGAAAGCTGTTATGAGTGAATTAG
AGAAAAATAGAGATATTATTCTTTTCATTGATGAGCTTCATACAATCGTTGGTGCAGGTGGTGCGTCGGGTTCGCTTGAT
GCTTCAAATATGTTCAAACCTGCTTTAGCTAGGGGCGAAATACAATGTATTGGTGCAACAACTTTAGACGAATATCGTCA
GTATATTGAGAAAGATGGCGCATTAGCACGTCGTTTTCAAATGGTTATGATTGAGCCTACCGATGTAGATGAAACAGTTC
AAATCTTAGATAATATCAAAGATAAGTATGAATCTCATCATCATGTTAAATATAGCCCAGAAGCATTAAAAGCCTGTGTA
ACACTTTCAGAACGTTATATTACAGACCGTTTCTTGCCCGATAAAGCAATTGATGTTTTGGATGAAGCTGGTGCAAGAGT
ACATATTAATAATATTCACGTTCCAGAAGAAATCACGAAATTAGAAGCTGATATCGAAGACGTAAAAGTAGAAAAAAATC
AAGTTGTGAAAAGTCAAAAATACGAAGAGGCTGCACAACTTAGAGATAAAGAAAAACGCCTAATTGAAAAATTGGAACGT
GCAAAATATAAATGGGAACACGAAACTCGTCAGATGACTTATCCAGTTACAGAGGATAACATTGGAGAAGTAATTGCAAT
GATGACAGGAATCCCAGTAAAACGTATTACACAAAGTGAAGGACAGAAAATTTTGGGAATGAAAGAAGCCTTGACAGGAA
AGGTTATCGGACAAGACCAAGCTGTTGTCAAACTTACAAAAGCAATTCAGCGTACTCGTGTAGGCTTGAAAGACCCAAAT
AAACCAATTGGTTCCTTTGTTTTCTTAGGTCCAACTGGTGTAGGAAAAACAGAGCTTGCAAAAGTATTAGCTACCTATCT
TTTTGACCGTCCAGATGCGCTTATTCGTATAGATATGAGTGAGTATATGGAGAAATTCTCTATCTCTCGTTTGGTAGGTG
CGCCTCCAGGATATGTTGGTTATGAAGAAGGTGGACAGCTTACTGAAAAAGTTCGTCGTAAGCCTTATAGTGTTATTTTG
CTTGATGAGATTGAGAAAGCACATCCAGATGTTTTCAATATTTTATTGCAAGTTTTGGATGATGGAGTCCTTACTGATGG
CTTAGGTCGTAGAGTAGATTTCAGAAATACAATCATTATCATGACTTCAAATATTGGAGTTCGTCAGCTTAAAGATTTTG
GTGCAGGTGTAGGTTTTTCTACGCAAGCAAAACAATCAGTTGGTGATGATGTAATGAAAAATACCATTCAGAAAGCACTC
AAAAAAGCATTCTCACCTGAGTTTTTGAATCGTCTTGATGATGTAATTATCTTTAATTCACTTGAAAGAGATGATATTCA
CAAAATTATTGATATTTCTTTGGGTAAATTATTCCATAGAATCAAACTTTTGGGTTATAATGTTGAACTTACTGAAGCTG
CAAAAGACTTTTTATCAGAAAAAGGATTTGATAAGCAATATGGAGCAAGACCTCTCAACCGAGCAATCCAAAAATATTTG
GAAGACCCAGTTGCAGAAGAGCTTCTGAAAGGTGAAATCCAAGAAGGCGATACACTTATGGCAGACCACAAAGAAGGTGA
GCCAGAACTAACTGTAAAAGTTAAAAAGCAAAAAACAAAGAAAACAGAGGAGTAA

Protein sequence :
MEAKFSDRVKEVISLAREEALRLGHDYIGTEHLLLGMIREGEGSAINILKKLGVTIEELKAEIERHSQGTATYNVRNLAN
IPLTRQAEKVLKITYLEAKIFKADLIGTEHLLLSILRDEDSIATHILEKFNITYEVVKEMLQYHTDKPITSAAEEDDDEG
RIFGGGREPSGAGGTQGKSTEKSRTPVLDNFGRDLTKFAEEDKLDPIIGREKEIERVAQILSRRKKNNPILIGEPGVGKT
AIAEGLALRIVQRKVSRILFGKRVVTLDLASLVAGTKYRGQFEERMKAVMSELEKNRDIILFIDELHTIVGAGGASGSLD
ASNMFKPALARGEIQCIGATTLDEYRQYIEKDGALARRFQMVMIEPTDVDETVQILDNIKDKYESHHHVKYSPEALKACV
TLSERYITDRFLPDKAIDVLDEAGARVHINNIHVPEEITKLEADIEDVKVEKNQVVKSQKYEEAAQLRDKEKRLIEKLER
AKYKWEHETRQMTYPVTEDNIGEVIAMMTGIPVKRITQSEGQKILGMKEALTGKVIGQDQAVVKLTKAIQRTRVGLKDPN
KPIGSFVFLGPTGVGKTELAKVLATYLFDRPDALIRIDMSEYMEKFSISRLVGAPPGYVGYEEGGQLTEKVRRKPYSVIL
LDEIEKAHPDVFNILLQVLDDGVLTDGLGRRVDFRNTIIIMTSNIGVRQLKDFGAGVGFSTQAKQSVGDDVMKNTIQKAL
KKAFSPEFLNRLDDVIIFNSLERDDIHKIIDISLGKLFHRIKLLGYNVELTEAAKDFLSEKGFDKQYGARPLNRAIQKYL
EDPVAEELLKGEIQEGDTLMADHKEGEPELTVKVKKQKTKKTEE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 0.0 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Fleli_0623 YP_006432880.1 chaperone ATPase VFG0079 Protein 0.0 52
Fleli_0623 YP_006432880.1 chaperone ATPase VFG0080 Protein 6e-150 52