Gene Information

Name : Desde_4209 (Desde_4209)
Accession : YP_006432263.1
Strain : Desulfitobacterium dehalogenans ATCC 51507
Genome accession: NC_018017
Putative virulence/resistance : Unknown
Product : rRNA large subunit m3Psi methyltransferase RlmH
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4282498 - 4282980 bp
Length : 483 bp
Strand : -
Note : PFAM: Predicted SPOUT methyltransferase; TIGRFAM: rRNA large subunit m3Psi methyltransferase RlmH

DNA sequence :
ATGCTGCAGATTAAAATCATTGCTGTGGGAAAGATTCGGGAAAAGTTCCTTATAGAAGGGATTAAGGAATATACGAAACG
CTTAAGTGCTTATATCCGCTTGGAGATTATGGAGATTGGGGATGAGCCCTGTCCGGAGCGTCTTTCCTCCGCCGATGAAG
AACTGGTTAAGAGTAAAGAAGGTGAGCGGATTCTGAAAGGGATCGGCTCTCAGGAGCATGTCATTCTTCTTGATCTGCAG
GGAAAAGAATTCACCTCTCCGGGCTTCTCGGAATATATAGATGGCCTTGCCTTAATGGGAAAAAGCAGTGTGACTTTTAT
CATCGGTGGTTCCTTAGGAGTCTCCCAGGAAGTAAGGGGAAGAGCGGATTACCGCTGGTCTTTTTCCCAATTAACCTTCC
CTCATCCTCTCATTAGACTGCTGCTTCTGGAACAAATCTATCGGGCCATGAGAATCAGCAAGGGGGAGCCTTATCATAAA
TAG

Protein sequence :
MLQIKIIAVGKIREKFLIEGIKEYTKRLSAYIRLEIMEIGDEPCPERLSSADEELVKSKEGERILKGIGSQEHVILLDLQ
GKEFTSPGFSEYIDGLALMGKSSVTFIIGGSLGVSQEVRGRADYRWSFSQLTFPHPLIRLLLLEQIYRAMRISKGEPYHK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0026 YP_300116.1 rRNA large subunit methyltransferase Not tested SCC15305RM Protein 2e-33 48
orfX YP_251938.1 rRNA large subunit methyltransferase Not tested SCCmec Protein 5e-33 48
unnamed ACL99851.1 hypothetical protein Not tested Type-V SCCmec Protein 5e-21 47
unnamed BAC57492.1 hypothetical protein Not tested Type-IIIinv SCCmec Protein 3e-33 46
SAV0024 NP_370548.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 4e-33 46
unnamed BAB72121.1 hypothetical protein Not tested Type-IVa SCCmec Protein 3e-33 46
unnamed BAB72138.1 open reading frame X Not tested Type-IVb SCCmec Protein 3e-33 46
unnamed BAC67575.1 open reading frame X Not tested Type-IVc SCCmec Protein 3e-33 46
orfXhom BAB83497.1 open reading frame X Not tested SCC 12263 Protein 7e-30 46
unnamed BAA82243.1 orfX Not tested Type-II SCCmec Protein 3e-33 46
SE0023 NP_763578.1 rRNA large subunit methyltransferase Not tested SCCpbp4 Protein 5e-33 46
unnamed BAD24821.1 conserved hypothetical protein orfX Not tested Type-V SCCmec Protein 3e-33 46
orfX BAA86653.1 open reading frame X Not tested Type-I SCCmec Protein 3e-33 46
SERP2529 YP_190070.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 5e-33 46
unnamed BAG06184.1 conserved hypothetical protein orfX Not tested Type-VII SCCmec Protein 3e-33 46
unnamed BAB47681.1 open reading frame X Not tested Type-III SCCmec Protein 3e-33 46
unnamed BAC53844.1 open reading frame X Not tested SRImec-III and SCCmec-III region Protein 3e-33 46
SAR0024 YP_039501.1 rRNA large subunit methyltransferase Not tested Type-II SCCmec Protein 4e-33 46
orfX AAL26648.1 unknown Not tested SCCcap1 Protein 4e-32 45