Gene Information

Name : Desde_2269 (Desde_2269)
Accession : YP_006430407.1
Strain : Desulfitobacterium dehalogenans ATCC 51507
Genome accession: NC_018017
Putative virulence/resistance : Virulence
Product : ATP-dependent chaperone ClpB
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2283472 - 2286066 bp
Length : 2595 bp
Strand : -
Note : PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: ATP-dependent chaperone ClpB

DNA sequence :
ATGTCTTTTGATACAAACCGCTTTACCCAAAAATCTCAGGAAGCCATTATTCAAGCTCAAACTATGGCGGAGCGCAATGG
CAATAGTCAAGTGGAGCCTGAGCATTTGCTCTTATCTCTTCTGGAACAAGGAGAGGGTGTCGTTCCTCAAGTTTTAACAA
AGCTAAATATTCCAGTGGGGGCTTTAGCTCAAAAAGTGCGCCAAGAGATTAATCGTTTCCCACGCATGATGGGGTCCAAT
GTTCAATTGACCATTTCCTCCCGTCTGCGGACTGTATTGGTCTCGGCTCACGATGAAATGGAGATCTTCAAGGATGAATA
TGTAAGTACCGAACATCTTTTGCTGGCGATTCTCAGTCAAGCTGGAGGAGCAGCGGAAAAAGTTCTTAAACAAGAAGGTT
TAAATCGCGAGAAACTCCTTCAGGCTCTGCGCGAGGTTAGAGGGACCCAACGGGTTACGAGCCAGACACCGGAAGGCACC
TATCGCGCCCTTGAACAATATGGACGCAATCTCGTGGAACAAGCACGCCGGGGAAAATTGGATCCGGTAATAGGCCGTGA
TGAGGAAATTCGCCGCGTCATCCAAATTCTCTCCCGCAAGACCAAAAACAACCCCGTTCTCATCGGGGAGCCCGGTGTTG
GAAAAACTGCCATTGTCGAAGGCTTGGCTCAACGGATCGTCCGTGGTGATGTTCCTGAATCGGTGAAAGATAAGAAGATC
ATTGCTCTGGATATGGGGTCATTGATTGCCGGAGCGAAATACCGGGGAGAATTTGAGGAACGACTTAAAGCCGTTCTTAA
GGAAGTTCAGGAACGAGAGGATATTATTCTCTTTATCGATGAACTGCATACGGTGGTAGGAGCAGGGGCTGCGGAAGGGG
CAATGGATGCGGGTAATATGCTCAAACCCATGCTTGCCCGGGGTGAGCTTCATATGGTAGGCGCCACAACATTGGATGAA
TATCGCAAATTTATTGAAAAGGATGCCGCCCTCGAACGGCGTTTTCAACCGGTTATGGTAGGGGCTCCCAGTGTTGAGGA
TACTATCTCCATATTGCGGGGGCTCAAAGAACGCTATGAAACTCATCATGGAGTGCGAATTACCGATGGAGCCATTATCG
CAGCGGCAGTTCTTTCTGATCGCTATATCAGCGATCGTTTCCTGCCGGATAAAGCCATCGACCTTATCGATGAAGCAGCT
GCCCGCATGCGTATGGAAATCACCAGTGACCCCTATGAACTGGATCAAATCAAACGCAGAATTCTGCAACTGGAAATTGA
ACGAGAGGCCTTAAAGAAGGAAAAAGACGAGGGCAGTAAGGAACGTCTTGAAAAAATCGAAGAGGACCTGGCTAACCATA
AAGAAGAACGTAGTGCCCTGGAAGCTCAGCTCCAAGGTGAAAGAGAAGTTCTGGCAACAATCAATTCACTAAAGGAAAAC
ATTGATCAGACCCGTCTTAAAATGGAACAAGCACAGCAAGCTTTTGATTATAACAAAGCGGCTGAGCTTCAATATGGAGT
ATTGCCAAAGCTGGAGAAGGATCTCAATGCTTTAGAAGAGCAGCTTCGTAATCGTAAGAATACTTTGCTCAAGCAAGAAG
TAGGGGAAGAGGACATTGCTGAAGTGGTGGCTAAATGGACTCAAGTTCCTGTTGCCAGACTTTTGGAAAGTGAAATGGAA
AAACTAGTTCATATGGAAGAGCGTATCCATCAACGGGTGATAGGACAAGAAGAGGCTGTGAAGGCAGTAGCCGATGCTGT
GCGCAGATCGAGAGCAGGCCTGCAAGACCCCAACCGGCCCTTAGGTTCTTTCTTGTTCCTTGGTCCCACAGGGGTAGGAA
AGACGGAGTTGGCTAAGGCTCTGGCTGAATTTCTCTTTGATGATGAACAAGGGATAGTTCGAATCGACATGTCGGAATAT
ATGGAAAAGCACACCGTTTCTCGCCTGATCGGTGCTCCTCCAGGGTATGTAGGCTATGAAGAGGGTGGCCAGTTGACTGA
AGCAGTGAGGCGTAAACCTTATAGTGTGGTGCTCTTTGATGAAGTGGAAAAAGCTCATGGGGACGTCTTTAATGTTTTGC
TTCAGCTTCTCGATGACGGTCGCTTAACCGATGGACAAGGACGAGTGGTTAATTTTAAGAATACAGTGGTCATTCTTACC
AGTAATATCGCCAGTCCTTTGATTCAAGAATTGACTGCCTCGGGGGCTTCACAAGAAGCTCTGCGTTCCCGGGTCACAGA
GGAACTCAAAGTTTATTTTCGACCGGAATTTTTAAATCGTTTGGATGAAATTATTGTCTTTCATCCTCTTGGTCAGGAGC
ATATTGGTTCAATCGTTCAAATTCAGATAAACAGGTTGCGCGACTATCTGGCTCCTCGCAAGATTACCTTGGGGCTTTCC
GATGCAGCATTAAATAAGATCATTCAACAGGGGTATGACCCGGTCTATGGAGCGAGACCCCTGAAAAGGGTCATCCAGCA
GAATCTCCAAAATCCTTTGGCCATGAAAATTCTTCAGGGAGTCATACATGAAGGAGATCATGTCGTGGTCAAGCTTGATC
CTCAAGGCGAGCTTCTGTTTGAAAGGTCGGAATAG

Protein sequence :
MSFDTNRFTQKSQEAIIQAQTMAERNGNSQVEPEHLLLSLLEQGEGVVPQVLTKLNIPVGALAQKVRQEINRFPRMMGSN
VQLTISSRLRTVLVSAHDEMEIFKDEYVSTEHLLLAILSQAGGAAEKVLKQEGLNREKLLQALREVRGTQRVTSQTPEGT
YRALEQYGRNLVEQARRGKLDPVIGRDEEIRRVIQILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRGDVPESVKDKKI
IALDMGSLIAGAKYRGEFEERLKAVLKEVQEREDIILFIDELHTVVGAGAAEGAMDAGNMLKPMLARGELHMVGATTLDE
YRKFIEKDAALERRFQPVMVGAPSVEDTISILRGLKERYETHHGVRITDGAIIAAAVLSDRYISDRFLPDKAIDLIDEAA
ARMRMEITSDPYELDQIKRRILQLEIEREALKKEKDEGSKERLEKIEEDLANHKEERSALEAQLQGEREVLATINSLKEN
IDQTRLKMEQAQQAFDYNKAAELQYGVLPKLEKDLNALEEQLRNRKNTLLKQEVGEEDIAEVVAKWTQVPVARLLESEME
KLVHMEERIHQRVIGQEEAVKAVADAVRRSRAGLQDPNRPLGSFLFLGPTGVGKTELAKALAEFLFDDEQGIVRIDMSEY
MEKHTVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHGDVFNVLLQLLDDGRLTDGQGRVVNFKNTVVILT
SNIASPLIQELTASGASQEALRSRVTEELKVYFRPEFLNRLDEIIVFHPLGQEHIGSIVQIQINRLRDYLAPRKITLGLS
DAALNKIIQQGYDPVYGARPLKRVIQQNLQNPLAMKILQGVIHEGDHVVVKLDPQGELLFERSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec27 YP_851418.1 ATPase Not tested PAI II APEC-O1 Protein 4e-105 41
aec27 AAQ96721.1 Aec27 Not tested AGI-1 Protein 3e-105 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desde_2269 YP_006430407.1 ATP-dependent chaperone ClpB VFG2076 Protein 2e-122 44
Desde_2269 YP_006430407.1 ATP-dependent chaperone ClpB VFG2084 Protein 5e-112 41