Gene Information

Name : Desde_1778 (Desde_1778)
Accession : YP_006429967.1
Strain : Desulfitobacterium dehalogenans ATCC 51507
Genome accession: NC_018017
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1790485 - 1791165 bp
Length : 681 bp
Strand : -
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence : 
ATGAGCCCAAACATCCTGATTATTGAGGATGAAGAAAAAATTGCTCGCTTTATGGAGCTTGAGCTTAATTATGAAGGGTA
CACTGTCACGAAGGCCTTTGATGGACGAACGGGGCTCGAACTTGCGGAGACCGGACGGTTCGACTTGATCCTGCTTGATA
TCATGCTGCCTAAATTAAACGGTACAGAGGTTCTGCGGAGAATCCGCCGAACCTCTTCCGTCCCCATTATCATGCTCACA
GCCCGGGACAGCGTCATGGATAAGGTTTCCGGTCTCGACAGCGGAGCAAACGATTATATCACCAAGCCTTTCGCCATCGA
GGAGCTTCTCGCCCGTATCCGCAACGCCCTGAGGAACACTGTATCCTTATCCTCTACGGAGGTATTGTCCGCTTCCGGCC
TGCAGCTGGATAGCGACCGCCGCACCGTGACCATGATGGGGGAACCCGTTGATTTAACCAAACGGGAATTTGACCTGCTC
CATTTCCTCCTTAAAAACAAAGGCATCGTCCTCTCACGGGAAGCTCTGCTGGAAAATGTCTGGGGCTTTGATTTTGCGGG
AGACACCAACGCTGTGGATGTCTACATACGCTTTCTCCGCGGAAAAATTGACGAAGTATTCAATATTAAATTCATTCACA
CCGTCAGAGGAGTAGGATATGTGATTAAAGATGACCAATAA

Protein sequence : 
MSPNILIIEDEEKIARFMELELNYEGYTVTKAFDGRTGLELAETGRFDLILLDIMLPKLNGTEVLRRIRRTSSVPIIMLT
ARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTVSLSSTEVLSASGLQLDSDRRTVTMMGEPVDLTKREFDLL
HFLLKNKGIVLSREALLENVWGFDFAGDTNAVDVYIRFLRGKIDEVFNIKFIHTVRGVGYVIKDDQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-47 47
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 8e-47 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene1528. Protein 4e-50 52
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE015929.1.gene1106. Protein 5e-47 51
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_003923.1003417.p0 Protein 3e-51 50
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_013450.8614146.p0 Protein 3e-51 50
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002951.3238224.p0 Protein 3e-51 50
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007793.3914065.p0 Protein 3e-51 50
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002758.1121390.p0 Protein 3e-51 50
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_010079.5776364.p0 Protein 3e-51 50
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002952.2859858.p0 Protein 3e-51 50
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_007622.3794948.p0 Protein 3e-51 50
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0197 Protein 1e-45 48
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0125 Protein 1e-44 45
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0308 Protein 5e-42 45
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7685629. Protein 3e-42 44
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0111 Protein 3e-42 44
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain DQ212986.1.gene4.p01 Protein 9e-35 42
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_014475.1.orf0.gen Protein 6e-37 42
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_005054.2598277.p0 Protein 6e-37 42
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0083 Protein 7e-45 42
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain FJ349556.1.orf0.gene Protein 1e-36 42
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AF155139.2.orf0.gene Protein 2e-36 42
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0638 Protein 2e-38 42
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene2815. Protein 3e-39 42
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain AE000516.2.gene3505. Protein 3e-31 42
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_012469.1.7686381. Protein 2e-40 41
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0347 Protein 7e-39 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0596 Protein 2e-47 47
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1389 Protein 2e-40 46
Desde_1778 YP_006429967.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 2e-44 44