Gene Information

Name : Ornrh_2159 (Ornrh_2159)
Accession : YP_006428085.1
Strain : Ornithobacterium rhinotracheale DSM 15997
Genome accession: NC_018016
Putative virulence/resistance : Virulence
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2212773 - 2213462 bp
Length : 690 bp
Strand : -
Note : PFAM: ABC transporter; TIGRFAM: putative bacteriocin export ABC transporter, lactococcin 972 group

DNA sequence : 
ATGATTGATATACAAGATTTAAACAAGTCCTACCAAATGGGCAAAAATAGCCTACATGTACTAAAAGGCATTGATTTACA
TGTAGATAAAGGCGAATTTGTAGCCATCATGGGTTCGTCTGGCTCGGGAAAATCCACGCTGCTCAATATCATTGGCATGC
TTGATGAACACGACACAGGCACCTACGACTTAGATGGAGTGCGCATCGAAAAACTAAGCGAGAAAAAAGCCGCACACTAC
CGAAACAAGTTTTTGGGCTTTATCTTTCAATCTTATAATTTAATTAATTTTAAAAATGTGGTGGAAAATGTGGCACTCCC
ACTCTATTACCAAAATATGAGTAGAAAAAAACGCCACGAAATCGCTATGCACTATCTCGACAAAGTGGGCTTGGTGCCTT
GGGCTAAACACATGCCCAATGAGCTCTCGGGCGGACAAAAACAGCGTGTTGCCATTGCGCGTGCTTTGGCTGCAAACCCT
AAATTGCTCCTTGCCGATGAGCCTACGGGTGCGCTAGATAGTGTAACCTCGCAAGAAGTGATGCGCCTGATTCAGCAGAT
TAATGATGAGGGCAAAACGATACTTATGGTAACGCACGAAGACGACATTGCACATATGTGCAAGCGGATTGTGCGATTGA
AAGACGGTGTGATTATAGAAGACGAAAAGATTAACCAAGTACGTGTGTAA

Protein sequence : 
MIDIQDLNKSYQMGKNSLHVLKGIDLHVDKGEFVAIMGSSGSGKSTLLNIIGMLDEHDTGTYDLDGVRIEKLSEKKAAHY
RNKFLGFIFQSYNLINFKNVVENVALPLYYQNMSRKKRHEIAMHYLDKVGLVPWAKHMPNELSGGQKQRVAIARALAANP
KLLLADEPTGALDSVTSQEVMRLIQQINDEGKTILMVTHEDDIAHMCKRIVRLKDGVIIEDEKINQVRV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-33 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-35 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 7e-35 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 7e-35 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ornrh_2159 YP_006428085.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 3e-54 54
Ornrh_2159 YP_006428085.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene798.p Protein 6e-37 43
Ornrh_2159 YP_006428085.1 antimicrobial peptide ABC transporter ATPase NC_008702.1.4606598. Protein 8e-41 42
Ornrh_2159 YP_006428085.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene598.p Protein 9e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Ornrh_2159 YP_006428085.1 antimicrobial peptide ABC transporter ATPase VFG0869 Protein 1e-23 42