Gene Information

Name : Terro_1237 (Terro_1237)
Accession : YP_006420882.1
Strain : Terriglobus roseus DSM 18391
Genome accession: NC_018014
Putative virulence/resistance : Virulence
Product : nucleoside-diphosphate-sugar epimerase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1445401 - 1446357 bp
Length : 957 bp
Strand : -
Note : PFAM: NAD dependent epimerase/dehydratase family

DNA sequence :
ATGGCACGTTACCTAATTACTGGCATAGCCGGATTTATCGGATCGTCTCTTGCTCACGAACTTCTGCGGCAGGGCCATGA
CGTTACCGGTGTCGATAACCTGTCAGGCGGTGACATCCGCAACCTCGACGGGATTATCCGCGAGATTGATCTTCACATCA
TGGATGTCAACGAAACAGACCGTTTACGCAAATGTTGCATTGGTGCTGACTTTCTGCTGCACCAAGCAGCGTTGGCGTCG
GTGCAACGCTCGATTGACGATCCGCAACTCACTCACGCTTCGAATGTGAATGGAACGCTGAGCGTTCTGATCGCAGCACG
AGATGCGCGTGTCTCTCGCGTGGTGTATGCAGCGTCTTCTTCTGCTTACGGCAATAAGTCTCAACAGGCCAAATGCGAGG
ATATGTTGCCGGATCCGCTTTCGCCGTATGCCGCGCAGAAACTTTCGGGCGAGCATCTTGTGCGGAGCTTCTCGCGGGTC
TACGGGATGGAAGGTGTGTGCCTTCGATACTTCAATGTCTTCGGACCACGGCAGGGTGCTGACTCCCCCTATTCAGGCGC
GATCGCCAAGTTCATCTCGATGATGCTTAAAGGGGAGACGCCCCTCATCTTTGGCGATGGCAGCCAGAGCCGCGACTTTA
CGTATATCGACAATGTCGTATCTGCGAACCTGCTTGCTTGCGGCGCGCCAGCATGCGATGTGTCGGGGCAGGTCTTCAAC
GTTGGCGGCGGCAGGAGTTACACGCTCAATCAAACCTACGATCTGCTGGCGCGGCATTTGTGTTTTCCTCACGGCCCACG
CTACACCGCACCAAGAGTGGGCGATATCCAGCACTCTGAGGCGGATCTGACGCGCAGTATGCAAATGCTGAGTTATGTCC
CACTGGCGAGCTTCGCTGATGGCATTGCGAGAACCGTTCAATGGTTTCTCACCAATGAGCTCCTTGCGGTGTCTTAG

Protein sequence :
MARYLITGIAGFIGSSLAHELLRQGHDVTGVDNLSGGDIRNLDGIIREIDLHIMDVNETDRLRKCCIGADFLLHQAALAS
VQRSIDDPQLTHASNVNGTLSVLIAARDARVSRVVYAASSSAYGNKSQQAKCEDMLPDPLSPYAAQKLSGEHLVRSFSRV
YGMEGVCLRYFNVFGPRQGADSPYSGAIAKFISMMLKGETPLIFGDGSQSRDFTYIDNVVSANLLACGAPACDVSGQVFN
VGGGRSYTLNQTYDLLARHLCFPHGPRYTAPRVGDIQHSEADLTRSMQMLSYVPLASFADGIARTVQWFLTNELLAVS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviC NP_458739.1 Vi polysaccharide biosynthesis protein, epimerase Virulence SPI-7 Protein 4e-45 41
tviC NP_807944.1 VI polysaccharide biosynthesis epimerase Virulence SPI-7 Protein 4e-45 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Terro_1237 YP_006420882.1 nucleoside-diphosphate-sugar epimerase VFG0430 Protein 2e-45 41