Gene Information

Name : Thivi_0930 (Thivi_0930)
Accession : YP_006413090.1
Strain : Thiocystis violascens DSM 198
Genome accession: NC_018012
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1014290 - 1014979 bp
Length : 690 bp
Strand : -
Note : PFAM: ABC transporter

DNA sequence : 
ATGATCGCGCTCGCCGGTTTGCAGCGGATCTTTCAGGTCGGCGACCAGCGAGTACACGCCCTGCGCGGTCTGACCCTGGA
TCTGGAGCCCGGCGATTATGTGGCGATCATGGGGCCATCGGGCTCCGGCAAGACCACGCTGCTTAATCTCCTGGGGCTGC
TGGACCATCCGGACGCTGGCAGCTATCGGTTCGACGGCGTTGAGACCACGACGCTGAACGAAGAGGCGCGCGCGCGGCTG
CGCCGGGAAAAGATCGGATTCGTCTTTCAATCCTTCCACCTGATCCCCCGACTGACGGCCTTCGCCAATGTCGAACTGCC
ACTCGTGCTCGCCGGTCTCGCGCCGCGCGAACGCCGTCCGCGGGTGGAAAAGATCCTCGACGCACTGGGACTCGCGCCGC
GCGCCGGCCATCGTCCCGATCAGCTCTCCGGCGGTCAGCGTCAGCGGGTCGCCATCGCGCGCGCCACGGTCATGGAGCCC
AGCCTGATCCTGGCCGACGAGCCGACCGGCAATCTCGACCGCGCCTCGGGCGAGGAGGTGATCCAGATCCTGGAGGCACT
GAACGACAAGGGTCTGATTCTGGTGCTGGTCACCCATGATCCGGCCCTCGGTGCCCGCGCCCGCCGGCGTATCCAGATGG
TCGATGGCGCGGTGGTGGCGGATGAAACGGCCGCCGGGTCATGCGCCTGA

Protein sequence : 
MIALAGLQRIFQVGDQRVHALRGLTLDLEPGDYVAIMGPSGSGKTTLLNLLGLLDHPDAGSYRFDGVETTTLNEEARARL
RREKIGFVFQSFHLIPRLTAFANVELPLVLAGLAPRERRPRVEKILDALGLAPRAGHRPDQLSGGQRQRVAIARATVMEP
SLILADEPTGNLDRASGEEVIQILEALNDKGLILVLVTHDPALGARARRRIQMVDGAVVADETAAGSCA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-28 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-28 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 3e-28 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thivi_0930 YP_006413090.1 antimicrobial peptide ABC transporter ATPase NC_008702.1.4606598. Protein 2e-64 66
Thivi_0930 YP_006413090.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 5e-45 47
Thivi_0930 YP_006413090.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7685735. Protein 1e-30 43
Thivi_0930 YP_006413090.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene798.p Protein 1e-28 41
Thivi_0930 YP_006413090.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686946. Protein 3e-20 41