Gene Information

Name : Thivi_0724 (Thivi_0724)
Accession : YP_006412902.1
Strain : Thiocystis violascens DSM 198
Genome accession: NC_018012
Putative virulence/resistance : Resistance
Product : antimicrobial peptide ABC transporter ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 787263 - 787964 bp
Length : 702 bp
Strand : -
Note : PFAM: ABC transporter; TIGRFAM: lipoprotein releasing system, ATP-binding protein

DNA sequence :
ATGAATGAAGCCGCAGCGGTTCTGGAGGTCGCGGGGCTCGTCAAGACCTTCCAGCAGGGTCCGCAGGAGGTTCAGGTGCT
ACGCGGGGTGACCTTCCGCGTCGCCCCCGGCGAACGGATCGCCATCGTCGGCGCCTCGGGGTCGGGCAAGAGTACCCTGC
TGCATTGTGTCGGCGGTCTGGATCGCCCGACTTCGGGCAGCGTGCGCTGGCTGGACCAGGATGTGAGCCGTCTGTCCGAG
GCGAAGCGGGGACTGCAGCGCAATCGGCATCTCGGCTTCGTCTATCAGTTCCATCATCTGTTGCCGGAATTCACGGCTAT
CGAGAACGTGGCCATGCCCCTGCTGATCGGCGGCGCCCGACCGGCCGAGGCGCGCGCCAGGGCCGAGGATCTCTTGAAGC
GGGTGGGACTCGAACACCGTGGCGCGCACAAGCCCGGCGAATTGTCCGGCGGCGAGCGCCAGCGCGCGGCCGTCGCCCGG
GCGCTCGTGACCCGCCCGGCTTGTCTGCTCGCCGACGAGCCGACCGGCAATCTGGACCGTCACACGGCTGGCGGCGTCTA
CGAACTCATGCTGGAGTTGAACCGGGACTTCGGCACCAGTCTGGTGATCGTCACCCACGACACCGAACTGGCGGCGCGGA
TGGATCAGATCTGGCGATTGGATGACGGGGTGTTGAGCCGGGACGCCGCCATCGCGCGATAG

Protein sequence :
MNEAAAVLEVAGLVKTFQQGPQEVQVLRGVTFRVAPGERIAIVGASGSGKSTLLHCVGGLDRPTSGSVRWLDQDVSRLSE
AKRGLQRNRHLGFVYQFHHLLPEFTAIENVAMPLLIGGARPAEARARAEDLLKRVGLEHRGAHKPGELSGGERQRAAVAR
ALVTRPACLLADEPTGNLDRHTAGGVYELMLELNRDFGTSLVIVTHDTELAARMDQIWRLDDGVLSRDAAIAR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-26 42
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-27 41
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-27 41
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thivi_0724 YP_006412902.1 antimicrobial peptide ABC transporter ATPase NC_008702.1.4606598. Protein 1e-36 49
Thivi_0724 YP_006412902.1 antimicrobial peptide ABC transporter ATPase NC_012469.1.7686878. Protein 3e-37 44
Thivi_0724 YP_006412902.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene598.p Protein 2e-33 41
Thivi_0724 YP_006412902.1 antimicrobial peptide ABC transporter ATPase CP001581.1.gene798.p Protein 4e-34 41