Gene Information

Name : Thivi_4474 (Thivi_4474)
Accession : YP_006416396.1
Strain : Thiocystis violascens DSM 198
Genome accession: NC_018012
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4834199 - 4834864 bp
Length : 666 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence :
ATGCGCATCCTGCTGGTGGAAGACGACGAGCGGGTCGCCGAGGGCGTGAACGCCGCGCTAAATGCGGCGGGGTTCGTCGT
CGATCAAACGAACGACGGCGAGGACGCCTGGTTCCGGGGCGACACCGAGAACTACGCCGCCGCGATCCTCGATCTCGGGC
TGCCCGGCCTGGATGGCCTGTCGGTGCTGCGCAAATGGCGCGCGGCCGGTCAGCGTCTGCCGGTGCTGATCCTGACCGCA
CGCGGCGACTGGAGCGAGCGGGTCGAGGGCATCGATGCCGGCGCCGACGACTATCTGCCCAAGCCCTTTCGCATGGAAGA
ACTGATCGCACGACTGCGGGCGCTGATCCGCCGTGCCGCCGGTCAGGCGAGCGCCCTGCTCGTCCATGGGCGAATCACGC
TCGACACCCGCCGCATGGCGGTCAGCGTGGATGGCACCCCGATCCATCTCTCGCCCCAGGAATACCGGCTGGTTAGCTAT
CTGATGCAGCACGCCGGGAGGGTCGTCTCCCAGCTCGAACTGACCGAACAGCTCTACGCCCAGGATTTCGAGCGCGACTC
CAATGCCGTGGAGGTGCTGGTCGGGCGGGTGCGGCGCAAGCTCGGCGCGGAGCTGATCGAGACCCGGCGCGGGTTCGGGT
ATCTGGTCGAGCCGGACCGGTCATGA

Protein sequence :
MRILLVEDDERVAEGVNAALNAAGFVVDQTNDGEDAWFRGDTENYAAAILDLGLPGLDGLSVLRKWRAAGQRLPVLILTA
RGDWSERVEGIDAGADDYLPKPFRMEELIARLRALIRRAAGQASALLVHGRITLDTRRMAVSVDGTPIHLSPQEYRLVSY
LMQHAGRVVSQLELTEQLYAQDFERDSNAVEVLVGRVRRKLGAELIETRRGFGYLVEPDRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-20 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thivi_4474 YP_006416396.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002516.2.879194.p Protein 3e-32 47
Thivi_4474 YP_006416396.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000647.1.gene1136. Protein 1e-26 43
Thivi_4474 YP_006416396.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0487 Protein 6e-21 43
Thivi_4474 YP_006416396.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0530 Protein 1e-26 43
Thivi_4474 YP_006416396.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0288 Protein 3e-19 42
Thivi_4474 YP_006416396.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000034.1.gene2022. Protein 8e-27 41
Thivi_4474 YP_006416396.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002695.1.913289.p Protein 5e-26 41
Thivi_4474 YP_006416396.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001918.1.gene2526. Protein 3e-26 41
Thivi_4474 YP_006416396.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001138.1.gene1939. Protein 1e-26 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thivi_4474 YP_006416396.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 8e-20 43
Thivi_4474 YP_006416396.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0473 Protein 2e-20 43
Thivi_4474 YP_006416396.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0475 Protein 1e-26 41