Gene Information

Name : Thivi_4335 (Thivi_4335)
Accession : YP_006416270.1
Strain : Thiocystis violascens DSM 198
Genome accession: NC_018012
Putative virulence/resistance : Virulence
Product : response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 4710988 - 4711686 bp
Length : 699 bp
Strand : +
Note : PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal

DNA sequence : 
ATGCATCTCCTGATCGTCGAGGACGAACCCGAACTGCGCCGTCAGATCGTCGCGCGTCTGACGCGCGACGGCTGCATCGC
CGAGGGTACCGGCGACGGTCAGGAGGGGCTCTATCTGGCCAGCGAATACAGCTTCGACGCGGCGGTCATCGACCTGGGGC
TTCCCGGACTCTCCGGCCTGGAGATCATCCGTCAACTGCGCGTGCGCGAAAGCCTGCTGCCCATCCTCATCCTGACCGCC
CGCGACCGCTGGCAGGATAAGGTGGAAGGTCTGGAGGCCGGCGCGGACGATTATCTGGTCAAACCCTTCCAGTCCGAAGA
ACTCCTCGCCCGTCTGCGCGCGCTGGTCCGGCGCGCCGCTGGGACCGCCTCGCGCGCGCTGCGCCGGGGTCCGTTGCGCC
TGGATCTGACGACCGAGAAGGCATGGATCCACGACCGTCCGCTGGATCTGACCGCCTACGAATACCGTCTGCTCGAACAG
CTCGCGGCCAGCCAGGGCAAGGTGCTCTCCAAACAGGCGCTGGCCGACCGGCTCTATCCGCATGACGAGGACCGCGAGAG
CAATGTCATCGAGGTGTTGGTCGGGCGGCTGCGACGCAAACTCGATCCGGACGGCTCGCTTGCCCCCATCGAAACCCTGC
GCGGACGCGGGTATCGCCTGACCCTGACCGATGCACCCACCAAGGGCGGCGCGGGATGA

Protein sequence : 
MHLLIVEDEPELRRQIVARLTRDGCIAEGTGDGQEGLYLASEYSFDAAVIDLGLPGLSGLEIIRQLRVRESLLPILILTA
RDRWQDKVEGLEAGADDYLVKPFQSEELLARLRALVRRAAGTASRALRRGPLRLDLTTEKAWIHDRPLDLTAYEYRLLEQ
LAASQGKVLSKQALADRLYPHDEDRESNVIEVLVGRLRRKLDPDGSLAPIETLRGRGYRLTLTDAPTKGGAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 1e-28 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thivi_4335 YP_006416270.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002516.2.879194.p Protein 1e-52 57
Thivi_4335 YP_006416270.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000647.1.gene1136. Protein 3e-38 45
Thivi_4335 YP_006416270.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain NC_002695.1.913289.p Protein 9e-37 45
Thivi_4335 YP_006416270.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001918.1.gene2526. Protein 3e-37 45
Thivi_4335 YP_006416270.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP000034.1.gene2022. Protein 7e-38 45
Thivi_4335 YP_006416270.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0530 Protein 3e-38 45
Thivi_4335 YP_006416270.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP001138.1.gene1939. Protein 9e-38 44
Thivi_4335 YP_006416270.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain CP004022.1.gene1005. Protein 4e-37 43
Thivi_4335 YP_006416270.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0083 Protein 1e-20 42
Thivi_4335 YP_006416270.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain HE999704.1.gene1528. Protein 3e-20 41
Thivi_4335 YP_006416270.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain BAC0638 Protein 2e-18 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thivi_4335 YP_006416270.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG0475 Protein 8e-38 44
Thivi_4335 YP_006416270.1 response regulator with CheY-like receiver domain and winged-helix DNA-binding domain VFG1390 Protein 1e-22 41