Gene Information

Name : Thivi_3884 (Thivi_3884)
Accession : YP_006415849.1
Strain : Thiocystis violascens DSM 198
Genome accession: NC_018012
Putative virulence/resistance : Unknown
Product : hydroxymethylbilane synthase
Function : -
COG functional category : -
COG ID : -
EC number : 2.5.1.61
Position : 4224501 - 4225424 bp
Length : 924 bp
Strand : -
Note : PFAM: Porphobilinogen deaminase, C-terminal domain; Porphobilinogen deaminase, dipyromethane cofactor binding domain; TIGRFAM: porphobilinogen deaminase

DNA sequence : 
ATGTCGAACAGCATTCGTATCGCCACCCGTAAGTCTCCCCTGGCCCTGTGGCAGGCTGAGCACGTCGCCGCCCTGCTGAA
GGGGCTCTATCCCGACCTCGCCATCGAGATCATTGGCATGAGCACCAAGGGCGACCGGATTCTCGACGCGCCGCTAGCGA
AGGTCGGCGGCAAGGGGCTGTTCGTCAAGGAACTGGAACAGGGGATGCTTGAGGGCACGGCCGATATCGCGGTGCACTCG
CTGAAGGATGTCCCGGTGGAGTTCCCCGAGGGGCTGCATCTGGCGGTGGTCATGGAACGCGAGGATCCGCGCGACGCCTT
CGTCTCGAACGTCTATCCGGATCTGGACGCGCTGCCCCAGGGCGCCTGTGTCGGCACCTCCAGTCTGCGCCGTCAGTGCC
AGCTCGCCGACCGCCGGCCCGATCTGCGCATCGAACCGCTACGCGGGAACGTCAACACCCGTCTCGCCAAGCTCGATGCG
GGCGAGTACGACGCCATCATCCTGGCCGCCGCCGGGCTGATGCGCCTCGGTTTCGAGTCGCGCATCCGTGCACGGATCGA
GCCCGCCTTCAGTCTGCCGGCGATCGGTCAGGGCGCGATCGGCATCGAGTGCCGTCAGAACGATCCGCGTATCAATGACT
TGATCGCGCCGCTGCATCATCCCGACACCGCCGACCGGGTGCTGGCCGAACGGGCGATGAACGCGCGTCTGCACGGCGGC
TGCCAGGTGCCGATCGCCGGTCACGCCACCCTCGATGGCGAGCGTCTGCTGTTGCGCGGGCTGGTCGGCAGCCCGGATGG
AAAACTGGTCCTGCGGGCCGAATTCGCGGGACCGCGCGCCGAGTTCGACCACATCGGCACCCAGGTCGCCGATGACTTGC
TCGCGCAGGGCGCCGGCGCGATTCTGAGCGCGCTCCAGGAATGA

Protein sequence : 
MSNSIRIATRKSPLALWQAEHVAALLKGLYPDLAIEIIGMSTKGDRILDAPLAKVGGKGLFVKELEQGMLEGTADIAVHS
LKDVPVEFPEGLHLAVVMEREDPRDAFVSNVYPDLDALPQGACVGTSSLRRQCQLADRRPDLRIEPLRGNVNTRLAKLDA
GEYDAIILAAAGLMRLGFESRIRARIEPAFSLPAIGQGAIGIECRQNDPRINDLIAPLHHPDTADRVLAERAMNARLHGG
CQVPIAGHATLDGERLLLRGLVGSPDGKLVLRAEFAGPRAEFDHIGTQVADDLLAQGAGAILSALQE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00327 YP_008207792.1 Porphobilinogen deaminase Not tested AbaR25 Protein 7e-81 61
BJAB0868_00331 YP_008211657.1 Porphobilinogen deaminase Not tested AbaR26 Protein 7e-81 61