|
Name : Thivi_2782 (Thivi_2782) Accession : YP_006414825.1 Strain : Thiocystis violascens DSM 198 Genome accession: NC_018012 Putative virulence/resistance : Virulence Product : putative nucleoside-diphosphate sugar epimerase Function : - COG functional category : - COG ID : - EC number : - Position : 3051741 - 3053591 bp Length : 1851 bp Strand : - Note : PFAM: Polysaccharide biosynthesis protein DNA sequence : ATGAATCCGATGATCGACCGGTTGCGGTCACGTACCGCAGCCTTTGCCCATGATCTGCTGACCATCCCGGCAAGCTGGCT GCTGGCCTATTGGCTGCGCTTCAATCTTGATCGGATTCCGCCGGATTTCGTCGCCAGCGCGCTGCAGTCGCTGCCCTGGG TCATCCTGATCCAGGGCACGATCTATTGGCTCTTCGGTCTGTATCGCGGCGTCTGGCGCTTTGCGTCCGTCCCGGACCTG GTGCGGATCACCAAGGCGGTACTCGCCGGAACCGCGGCGATCGTCGTCCTGCTGTTCATCGTCAACCGCTCGGCCCTGGT CCCGCGCTCGGTCCCGGTGCTCTATCTCGGGCTGCAACTCCTGCTCTTGGCGGGGCCACGCTTGATCTATCGCTGGCTCA AGGATCATCGACTCAATCTGTCGTCCGGCCAGCGGGTGCTGATCGTCGGGGCCGGACGCGCCGGCGAGATGCTCGCCCGC GACATGCTCCGCGATCCGCATCGCGCCTATTTTCCGCTCGGCTTCGTCGACGACAAGCTGCGCCGCCAGGGCGCCGAGGT CCATGGCGTCCCCGTGCTGGGACCGACCGAGTCCATCCCCGAACTCGTCGAGCGCCTGGGGATCGACCTCCTGATGCTGG CCATTCCGAGCGCGACGGCGCGCGAGATGCGACGGCTGGTCGAGCTTTGCGAACACGCCGGCGTGGCATTCCGAACCGTC CCCGAACTGCGCAGCCTGATGTCGGGTCAGGTCAATCTCAGTCAATTGCGGCCGGTGTCGATCGAGGATCTGCTCGGACG CGAACCGATCCAACTCGACTGGAGCGCGATCCACGACGGGCTCGCGGGTCGCGATATCCTGATCACCGGGGCCGGCGGAT CCATCGGCTCCGAACTGGTCCGCCAGATTGCCGGCGCCGGACCGGCCCGCTTGATCCTCATCGATCACAGCGAATTCAAT CTCTACCGCATCGAGATGGAGTTGCTGGAGACCTATCCGACACTGCGTTTTTCGCGCCATCTGCTGGATGTCGCCGACGC GCGCGCGGTCGCGGCGCTGTTTCGGGACGAACGTCCTGGAATCGTCTTTCACGCCGCCGCCTACAAGCATGTCCCACTGC TTGAAAACCAGCTCCGCGCGGCGGTCCGCAACAATGTCATTGGCACGCGCATCGTCGCCGAGGCGGCGGCGGCCAGCGGC TGCGAGCGCTTCGTCCTGATCTCCACCGACAAGGCGGTGAATCCGTCGAATGTGATGGGCGCGACCAAGCGCATCGCCGA ATCGATCTGTCAGATGTTGGACGGCCAGTCCGCGTGCCGCTTCATCACCGTGCGTTTCGGCAATGTGCTGGGATCGGCGG GCAGCGTGGTGCCCCTGTTTCAGCGTCAGATCGCGCGCGGCGGCCCGGTCACCGTCACCCATCCGGACATCGAGCGGTTT TTCATGACCATTCCCGAGGCCTGTCAGCTCATCATGCAGGCCGCCACGATCGGCGACGGCGGAGAAATCTTTGTCCTCGA CATGGGCGAGCCCATTAAGATCCGCTATCTTGCCGAGCAGATGATTCGCCTGTCCGGACATGAACCGGGCGAGGGGATTG CCATCGACTATGTCGGTCTGCGTCCGGGCGAAAAGCTCTACGAGGAGCTGTTTTATGCCTCCGAAGAACTCGTTGCAACG CGACACCCCAAGATCCGGGTGGCGCGGCGCGGCACCGAACTGAACCGCGCGGAGATCGGCCAGGAACTTGCGTCGCTCCA GCGCGCCGCCGAGACCGCCAACGCCGTCGACATGCTCGCGGCTTTTGGGGCGCTGGTTCCGGAATGGCATCGCATGACCG ACGGGGCTTAA Protein sequence : MNPMIDRLRSRTAAFAHDLLTIPASWLLAYWLRFNLDRIPPDFVASALQSLPWVILIQGTIYWLFGLYRGVWRFASVPDL VRITKAVLAGTAAIVVLLFIVNRSALVPRSVPVLYLGLQLLLLAGPRLIYRWLKDHRLNLSSGQRVLIVGAGRAGEMLAR DMLRDPHRAYFPLGFVDDKLRRQGAEVHGVPVLGPTESIPELVERLGIDLLMLAIPSATAREMRRLVELCEHAGVAFRTV PELRSLMSGQVNLSQLRPVSIEDLLGREPIQLDWSAIHDGLAGRDILITGAGGSIGSELVRQIAGAGPARLILIDHSEFN LYRIEMELLETYPTLRFSRHLLDVADARAVAALFRDERPGIVFHAAAYKHVPLLENQLRAAVRNNVIGTRIVAEAAAASG CERFVLISTDKAVNPSNVMGATKRIAESICQMLDGQSACRFITVRFGNVLGSAGSVVPLFQRQIARGGPVTVTHPDIERF FMTIPEACQLIMQAATIGDGGEIFVLDMGEPIKIRYLAEQMIRLSGHEPGEGIAIDYVGLRPGEKLYEELFYASEELVAT RHPKIRVARRGTELNRAEIGQELASLQRAAETANAVDMLAAFGALVPEWHRMTDGA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 8e-85 | 44 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 5e-85 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Thivi_2782 | YP_006414825.1 | putative nucleoside-diphosphate sugar epimerase | VFG1300 | Protein | 1e-82 | 44 |
| Thivi_2782 | YP_006414825.1 | putative nucleoside-diphosphate sugar epimerase | VFG0029 | Protein | 6e-76 | 41 |
