Gene Information

Name : Thivi_2490 (Thivi_2490)
Accession : YP_006414554.1
Strain : Thiocystis violascens DSM 198
Genome accession: NC_018012
Putative virulence/resistance : Unknown
Product : transposase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2734592 - 2735476 bp
Length : 885 bp
Strand : -
Note : PFAM: Integrase core domain; manually curated; non-canonical start codon

DNA sequence :
CTGCCCTGGATTGACGCGCAGCGCCCGACGTTCGACCTGGTCGCGATGTGTGGGGTGCTGGCGGTCAGCATCAGCGGTTA
TCGCGCCTGGAAACGCGGTGGCCACCCGGAACGCCGATGGCTCACGGATCTCCAAATGATCGTCCTGATTCAAGCGATCC
ACGCCGAAGTCAAGGGCGCCGACGGCAGTCCACGCCTGCTGCGGGAGCTGCATGCACGGGGCTTTCCGGCCAGCAAAGAA
CGGGTGGAGCGACGGATGCGCGAGAACGGCATCCGCGCGCGCCACAAGCGCCGCTACAAGGCCACGACGGACTCCAAGCA
CGCCCTGCCCGTCGCCAATAACCTGCTCGCGCGTGATTTCACCCCGAGTGGCCCGAATCAGGTCTGGACCGCCGACATCA
CGTACCTGTGGACCGATGAAGGCTGGCTGTCTCTCGCCATCGTGCTGGATCTGTTCAACCGCGAAGTCGTTGGTTGGTCG
CTCAAGCCGCGCATGACCGCCGATCGCGTCACCGATGCGCTCACCATGGCCTGGTTCCGACGCAAGCCAGCCACCGGCCT
GATGCATCACTCCGACCGGGGCAGCCAGTACGCCAGCCATTGTTTCCAGGACAAGCTGACCGAAGACGGGATGGTCTGTT
CAATGCGCCGCAAGGGCAACTGCTGGGACAATGCCCCCACCGAGAGCTGGTTCAACAGCTTCAAGAACGAGCGGGTCTTC
GGCGAGCACTTCGCCACGCGGGAAGCGATGAAGGCCGCGGCTTTCGAGTACATTGAGGTGTTTTACAATCGCAAGCGGCG
GCACTCGACCCTCGGTGACCACTCGCCGGTCCAGTTTCTGAAAGACTGGCTCAACGCTCAGCAGAGAGAAAAACGGGTAG
CATGA

Protein sequence :
MPWIDAQRPTFDLVAMCGVLAVSISGYRAWKRGGHPERRWLTDLQMIVLIQAIHAEVKGADGSPRLLRELHARGFPASKE
RVERRMRENGIRARHKRRYKATTDSKHALPVANNLLARDFTPSGPNQVWTADITYLWTDEGWLSLAIVLDLFNREVVGWS
LKPRMTADRVTDALTMAWFRRKPATGLMHHSDRGSQYASHCFQDKLTEDGMVCSMRRKGNCWDNAPTESWFNSFKNERVF
GEHFATREAMKAAAFEYIEVFYNRKRRHSTLGDHSPVQFLKDWLNAQQREKRVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 4e-47 46
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 6e-48 46
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 5e-48 46
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 1e-46 45
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-46 45
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 1e-46 45
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 6e-45 45
Z1573 NP_287077.1 hypothetical protein Not tested TAI Protein 4e-48 44
c3575 NP_755450.1 transposase insF Not tested PAI I CFT073 Protein 4e-48 44
Z1134 NP_286669.1 hypothetical protein Not tested TAI Protein 4e-48 44
hp1 AAC61713.1 Hp1 Not tested PAI I CFT073 Protein 3e-48 44
unnamed AAF09022.1 unknown Not tested SHI-O Protein 7e-48 43
unnamed AAQ07468.1 TnpI-like protein Not tested Not named Protein 7e-48 43
unnamed AAF09030.1 unknown Not tested SHI-O Protein 4e-48 43
tnpI AAD44751.1 TnpI Not tested SHI-2 Protein 4e-48 43
unnamed AAB86997.1 hypothetical 31 KD protein Not tested SHI-1 Protein 4e-48 43
tnpB CAB61574.1 transposase B Not tested HPI Protein 5e-35 42
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 3e-35 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Thivi_2490 YP_006414554.1 transposase VFG1631 Protein 3e-45 45
Thivi_2490 YP_006414554.1 transposase VFG1706 Protein 2e-48 44