Gene Information

Name : Alfi_0892 (Alfi_0892)
Accession : YP_006409945.1
Strain : Alistipes finegoldii DSM 17242
Genome accession: NC_018011
Putative virulence/resistance : Virulence
Product : dihydrodipicolinate synthase/N-acetylneuraminate lyase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 950426 - 951325 bp
Length : 900 bp
Strand : +
Note : PFAM: Dihydrodipicolinate synthetase family; TIGRFAM: N-acetylneuraminate lyase

DNA sequence : 
ATGTTCAAACTATCCGGACTCATTCCCGCCGTCTTCACGCCGTTCGACAAAACGGGCGCAATCAATTTTTCGCAAATCCA
GCCCTACGCCGACAAACTCATCGCCGAAGGGGCCTACGGCGTCTTCGTCTGCGGCTCGACGGGCGAATGCACCTCGATGA
CCGTCGCCGAGCGCAAGAGCGTGCTCGAAGCGTGGACCAAAGCCGTAGCAGGCCGCATCCTCATCATCGCCCACGTGGGC
GGCACCTGTCAGGCCGACTGCATCGAACTGGCCCGCCATGCCGCCGGACTGGGGGTAGATGCCGTAGGCACCGTCGCCCC
GTTCTACCTCAAACCCGGCTCGGTCGAAGAACTGGTGGCCTTCTACAAACCCATCGCCGCTGCATGCGCACCGCTGCCCT
TCTACGCCTACCACATTCCCTCGATGACGGGCATCAACCTGCCGATGATCGACTTCCTGAAGAATGGCTCGAAAGAGATT
CCCAACCTGAACGGCATCAAGTTCACGTCGAACAACTTCATGGAGATGATCGAATGCATCCGTTTCGACGGCGGCCGCTT
CGACATCCTCAACGGGTTCGACGAAATGCTGCTCTGCGGCATGGCCGTCGGCGCGCGCGGCGGCGTGGGCAGCACCTACA
ACTACTCGCTCCGCACCTACCAAAACATCTACGACGCCTTCATGGCCGGCGACCTCGAACAGGCCCGCGCGGCGCAGCAG
GAGTCGGTGGACATCGTGCACGTGATCATCAACCACGGCGGCGGCATCCGCGGCGGCAAAGCCAGCATGAAACTCGTCGG
CATCGACTGCGGCGACTGCCGTCTGCCCCTCGCCCCCTACACCGAGGCCGAAATAGCCCGGCTGGACGAAGAACTCCGGG
CGATCGGTTTCAAAAAGTAG

Protein sequence : 
MFKLSGLIPAVFTPFDKTGAINFSQIQPYADKLIAEGAYGVFVCGSTGECTSMTVAERKSVLEAWTKAVAGRILIIAHVG
GTCQADCIELARHAAGLGVDAVGTVAPFYLKPGSVEELVAFYKPIAAACAPLPFYAYHIPSMTGINLPMIDFLKNGSKEI
PNLNGIKFTSNNFMEMIECIRFDGGRFDILNGFDEMLLCGMAVGARGGVGSTYNYSLRTYQNIYDAFMAGDLEQARAAQQ
ESVDIVHVIINHGGGIRGGKASMKLVGIDCGDCRLPLAPYTEAEIARLDEELRAIGFKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1776 NP_231411.1 N-acetylneuraminate lyase Not tested VPI-2 Protein 3e-47 42
VC0395_A1374 YP_001217317.1 dihydrodipicolinate synthetase family protein Not tested VPI-2 Protein 3e-47 42
VPI2_0024c ACA01841.1 dihydrodipicolinate synthase/N-acetylneuraminate lyase Not tested VPI-2 Protein 1e-46 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alfi_0892 YP_006409945.1 dihydrodipicolinate synthase/N-acetylneuraminate lyase VFG1109 Protein 1e-47 42