Gene Information

Name : Alfi_0382 (Alfi_0382)
Accession : YP_006409463.1
Strain : Alistipes finegoldii DSM 17242
Genome accession: NC_018011
Putative virulence/resistance : Virulence
Product : chaperone ATPase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 429641 - 432094 bp
Length : 2454 bp
Strand : +
Note : PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; ATPase family associated with various cellular activities (AAA)

DNA sequence :
ATGCAAATCAAGATCTCGAAGACGCTCGAGGCTATTATAGCCCGGGCGGCATTTAATACGACCAAGGCCGGTCTCGACCA
CTCGCTCAAAGACTTTCTCACGCTGGAACTGCTCCGCGAGGAGGGATCGCTCGCCTACCAGCTTTTATCCTCCCGTCTCA
AGGACTGGGAACTCTACCAGATACGCCTGCGCATCGAACGCGAAATGCTCGCCGGGCAGCAGAGCACGACCCAATCCCCC
GAAGAGTTCTACCGTGCCTTCACCGAAGAGCTGCGGGCCTGTTCGGGCGCCGCACGGAGCGTTTCGACGGCCCACGCGCT
GCGGGCCATCGTCGGCGACCGCACGACGGCAACTTCGCGCATACTGGAAATGTACGGCGTAACGGGTACGGTGGTGGACG
AAGACCTCAAGAAGTTCGCCGTGGGCGACGACTTCCGCACCGAAATTCAGGTGCACATGCTCGACTTCAACGAAGAGAAC
AAACCCGAAGAGAAAACCTCGTCACACCTGCTCGACAAATTCGGCGTGAACCTCACGCGCATGGCCCGCGAGGGCAAAAT
CGACCCCGTCGTGGGGCGCGAGCAGGAGATCGAGCGCGTAGTCCAGATACTCTCGCGCCGCAAGAAGAACAATCCGATCC
TGATCGGCGAAGCGGGCGTGGGCAAGAGCGCCATCGTCGAGGGACTGGCCCTGCGCATCGCAAGCGGCGAAGTGCCCTAC
ACCATCGCCGACAAAACGCTCTTCTCGCTCGACGTCTCGTCGCTGGTGGCCGGCACGAAATTCCGCGGCGAATTCGAGGA
GCGCATGCAGCAGCTGCTCGACGAACTGCGCAAGGCGAAGGATACGATCATCTTCATCGACGAGATACACACCATCGTGG
GCGCAGGTTCGACGCAGGGCAGTCTCGACACGGCCAACATCCTCAAGCCGGCGCTGGCGCGCGGCGAGCTGCAGACCATC
GGCGCCACCACGCTCGACGAGTACCGCGAGAACATCGAGAGCGATTCGGCCCTCGAACGCCGCTTCCAGAAGGTCGTGGT
GGAGCCTACCACGCCCGACCAGACGCTCCAGATCCTGCGCAACATCGCGCCCCACTACGAACGCCATCACAAGGTGCGTT
ATACGGAAGAGGCCCTGCAGGCGTGCGTGACCCTCACGGGCCGCTATATCACCGACCGCTTCTTCCCCGACAAGGCCATC
GACGTCATGGACGAAGCTGGCTCGCGCATACACCTGCAGTCGGCGCGCGAACCGGCCGAGCTGCGCGAAATGGAGACGGC
GCTCACCGACGCGCAGCGCGAACGCCGCGAAGCGGTCGAAGCGCTGGTCTACGAAAAAGCCGCCTCGGCGCGGATGCGCG
AAATCGCGCTCCGCTCCAAACTGGGCGAAACCCGTGCCGAATGGCAGCGGTCGCTGGAGACCAACCCCGTAGAGGTCACT
GCGGAACACATCCAGCAGGTCATCACCTCGATCACGGGTATTCCCGCCGAACGGATATCGGGCGGCGAGATGACGCGCCT
GCAGATGCTCTACGACCACCTCGCACGCCGCGTCGTGGGACAGCAGGAGGCCGTGGAGAGGATCGCCCGCACAATCCGCC
GCTCGCGCGCCGGACTCAAGGACGAAAACCGCCCGATCGGCGTCTTCCTCTTCGTGGGTCCTACGGGCGTGGGCAAGACC
CTGCTGGCCAAGGAGGTCTCGAAGTGGCTGTTCGACGAGCACCGGGGCCTGATCCGCATCGACATGAGCGAATACGGCGA
GAAGCACAATGTCGCGCGTCTGATCGGATCGCCTCCGGGATACGTCGGTTACGGCGAGGGCGGCCAGCTCACCGAAGCGG
TCCGCCGCCAGCCCTACTCCGTGGTGCTGTTCGACGAGATCGAGAAGGCGCACCCCGAAGTCTTCAACTCCATGCTGCAG
ATCTTCGACGAGGGACACCTCACCGACGGTTCGGGCCGCAGGGTGGACTTCCGCAACACGATCATCATCATGACCTCGAA
CGTCGGGTCGCGCAACGTGGTCCAGAAATCGGTGCAGGTGGGTTACAGCACCGTCTCGAAGAGCGCCACGGCGGTCGCCG
CCCCGCAGTGCGAGTACCGCAAAGCCCTCGAACAGACCTTTGCGCCGGAGTTCCTCAACCGCATCGACGACATCGTGCTG
TTCCGCACGCTGGAGCTCTCCGACGTGGAGCGGATCATCGAGCTGGAGCTGCAGGGACTCTTCGAGCACACGCGCCGGCT
GGGCTACAAGGTGAAGATCACCGACGGAGCCAAACGCCGTCTGGCAGCCATGGGCTACGAATCGCGCTATGGCGTACGTT
CGCTCAAGCGCACACTGATGGACAACGTCGAGGAACCGCTCTCGACCCTGATTATCGACGGCAAGTTGCACGAAGGCGAC
ACGGTCGTCGTCGAATCGGGCAAGCCGCACGGCGTCCGGATACGCGTGGCATGA

Protein sequence :
MQIKISKTLEAIIARAAFNTTKAGLDHSLKDFLTLELLREEGSLAYQLLSSRLKDWELYQIRLRIEREMLAGQQSTTQSP
EEFYRAFTEELRACSGAARSVSTAHALRAIVGDRTTATSRILEMYGVTGTVVDEDLKKFAVGDDFRTEIQVHMLDFNEEN
KPEEKTSSHLLDKFGVNLTRMAREGKIDPVVGREQEIERVVQILSRRKKNNPILIGEAGVGKSAIVEGLALRIASGEVPY
TIADKTLFSLDVSSLVAGTKFRGEFEERMQQLLDELRKAKDTIIFIDEIHTIVGAGSTQGSLDTANILKPALARGELQTI
GATTLDEYRENIESDSALERRFQKVVVEPTTPDQTLQILRNIAPHYERHHKVRYTEEALQACVTLTGRYITDRFFPDKAI
DVMDEAGSRIHLQSAREPAELREMETALTDAQRERREAVEALVYEKAASARMREIALRSKLGETRAEWQRSLETNPVEVT
AEHIQQVITSITGIPAERISGGEMTRLQMLYDHLARRVVGQQEAVERIARTIRRSRAGLKDENRPIGVFLFVGPTGVGKT
LLAKEVSKWLFDEHRGLIRIDMSEYGEKHNVARLIGSPPGYVGYGEGGQLTEAVRRQPYSVVLFDEIEKAHPEVFNSMLQ
IFDEGHLTDGSGRRVDFRNTIIIMTSNVGSRNVVQKSVQVGYSTVSKSATAVAAPQCEYRKALEQTFAPEFLNRIDDIVL
FRTLELSDVERIIELELQGLFEHTRRLGYKVKITDGAKRRLAAMGYESRYGVRSLKRTLMDNVEEPLSTLIIDGKLHEGD
TVVVESGKPHGVRIRVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 2e-152 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Alfi_0382 YP_006409463.1 chaperone ATPase VFG0080 Protein 1e-146 50
Alfi_0382 YP_006409463.1 chaperone ATPase VFG0079 Protein 7e-160 47