Gene Information

Name : Alfi_2107 (Alfi_2107)
Accession : YP_006411086.1
Strain : Alistipes finegoldii DSM 17242
Genome accession: NC_018011
Putative virulence/resistance : Unknown
Product : Retron-type reverse transcriptase
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2377821 - 2379626 bp
Length : 1806 bp
Strand : +
Note : PFAM: Reverse transcriptase (RNA-dependent DNA polymerase); Type II intron maturase

DNA sequence :
ATGAGAAGTCCGGAAAGAGTATTAAACAGTCTGAACGAACACAGTAAGGATTCGAGCTACAAGTTCGAACGCCTTTACCG
GATTCTGTTCAACGAAGAGTTGTTCTATGTTGCCTACCAAAAGATCGCATCGAACGGAGGCAGTACGACCAAAGGCTCCG
ACGGTCGCAGTATCGACGAGATGAGCCTTGCCCGGATCGAAACGCTGATAGCCTCGTTGAAAGACGAAAGTTATCAGCCT
CACCCGTCGCGGAGGGTGCATATCCCGAAGAAAAACGGGAAAACGCGCCCTCTGGGAATACCGGCTTTTGAAGACAAGCT
GGTGCAGGAGGTAGTCCGCATGATTCTGGAAGCCATTTACGAGGGACATTTTGAGACCACCTCGCACGGTTTCCGACCTA
AACGGAGCTGTCACACAGCATTACTTCATATTCAAAAGACGTTCAGCGGGGCGAAATGGTTTATCGAGGGCGACATCAAA
GGGTTCTTCGACAACATTGACCATGATGTACTTGTCGGAATCCTGCGGGAGCGCATTTCAGATGACCGTTTTATCCGTCT
GATACGGAAATTCCTGAAAGCGGGATACGTCGAGGATTGGACGTTTCACAACACTTACAGCGGAATGCCGCAGGGAGGTA
TCGTCAGCCCGATTCTGGCGAATATATACCTCGATAAATTAGACAAGTACGTGAAAGAGTATATCCGACATTTCGACATG
GGAACCAAACGCAGGCCGGGCAAAGAGAGCAACGATTTGGCCAATGAACGAAAACGGACTGTGCGGAAACTGAAAAAGGT
AAAAGACGGGACTGAGAAGGCGGCTTTGGTCGCAAGACTCAAAGCCATCGAACAGGAACGTGCAGCATTTCCAAGCGGAG
ATGAAATGGACGGAAGTTACCGCAGGCTCAAATACATCCGTTACGCCGACGATTTTATTCTGGGTGTAATCGGCAGCAAA
GAGGATGCACTGCGGATAAAGGAGGATATTAAATCATTCCTATCCGAAAGCCTCGCCCTCGAACTGTCCGAAGAAAAGAC
GCTGATAACCCATACGGGTAAATCGGCGAAATTTCTCGGATATGAGATTACGGTAACACGGAACAATCATCAACGACGGG
ATGTGCAAGGACGTCTGCGACGCACCTACGGCAAGCGTGTCCGGCTGAATGTCAGCATGGCAACGCTGCGGGACAAACTT
CTGGAATACGGAGCTATGGAAATCAAGCTCCGCAACGGGAAAGAGATTTGGAAACCCAAATGCCGTTCAGGATTGATATT
CAACGACGATCTTGAAATCCTCGACCGATACAATCGGGAAACAGTGGGATTTTGCAACTATTACCTGATCGCCAACAACT
GCGTCGTACTGCACAACTTCAGATATATCATGGAGTACAGCATGTATAAAACATTTGCGGGCAAATATAGGAGCACGGTA
CGAAAAATCAACAAAAAGTACCGTCTCAACAAACTGTTCACCGTAAAGTACGAGCAGAAAGGGGTAATCAAGTCCCGAAC
CTTTTACAAGACAAGTTTCAAACGCCGGACAACGGCGTTCAACGGAAGCTGCGACATCGAACCGTACTCTATTGCAGACG
TGAGCCGAACCAATTTGACGGACAGGCTCAAAGCGGAAAAATGCGAATTGTGTGGGGCAACGGGCAAGCTGATTATGCAC
CATGTCCGCAACCTCAAAGACCTGAAAGGGAAAGAGAGTTGGAAACGGCTCATGTCAGCCCGAAAACGCAAGACCATTGC
GTTGTGTCCGAGTTGCCACAGGCTGCGGCATCTGGGAAAAGTTTAG

Protein sequence :
MRSPERVLNSLNEHSKDSSYKFERLYRILFNEELFYVAYQKIASNGGSTTKGSDGRSIDEMSLARIETLIASLKDESYQP
HPSRRVHIPKKNGKTRPLGIPAFEDKLVQEVVRMILEAIYEGHFETTSHGFRPKRSCHTALLHIQKTFSGAKWFIEGDIK
GFFDNIDHDVLVGILRERISDDRFIRLIRKFLKAGYVEDWTFHNTYSGMPQGGIVSPILANIYLDKLDKYVKEYIRHFDM
GTKRRPGKESNDLANERKRTVRKLKKVKDGTEKAALVARLKAIEQERAAFPSGDEMDGSYRRLKYIRYADDFILGVIGSK
EDALRIKEDIKSFLSESLALELSEEKTLITHTGKSAKFLGYEITVTRNNHQRRDVQGRLRRTYGKRVRLNVSMATLRDKL
LEYGAMEIKLRNGKEIWKPKCRSGLIFNDDLEILDRYNRETVGFCNYYLIANNCVVLHNFRYIMEYSMYKTFAGKYRSTV
RKINKKYRLNKLFTVKYEQKGVIKSRTFYKTSFKRRTTAFNGSCDIEPYSIADVSRTNLTDRLKAEKCELCGATGKLIMH
HVRNLKDLKGKESWKRLMSARKRKTIALCPSCHRLRHLGKV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EFAU085_00689 YP_008394213.1 HNH endonuclease domain protein Not tested Not named Protein 4e-119 46