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Name : Alfi_1812 (Alfi_1812) Accession : YP_006410821.1 Strain : Alistipes finegoldii DSM 17242 Genome accession: NC_018011 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : - COG ID : - EC number : - Position : 2024284 - 2027325 bp Length : 3042 bp Strand : + Note : PFAM: Type I restriction enzyme R protein N terminus (HSDR_N); Domain of unknown function (DUF3387); Type III restriction enzyme, res subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family DNA sequence : ATGCACTTCACCGAAGATGATTTTGAAAACGCTATTCTCGAGTTGTTTCGAGAGCAATTAGGCTATGATTATGTGTACGG TCCCAATGTAATGCGCGACTATGCAGAACCGCTTTACGTGGAGGTGCTGGAGGCTGTGTTGCCGCAGATCAATCGTGGAC TGCCACAGGCCGCTATTGACGAAGCTATGGTGAAAATTCGGACCTATGAGGGCGGAACGTTGGTACAGAAGAATGAATTG TTCACGGATTATTTGCAAAATGGCGTAGCTGTCAATTATTTCGATGGCCGCGAGCAATGTTCCGCAAATGTCCGGCTTGT CGATTACGATTCACCGTTACATAATCGGTTTACGATCGCTAATCAATGGACGGTCGATGGGCACTCGGTAAGGCGTGCGG ATATGATCGTATTTGTCAATGGATTGCCGCTGGTGGTGGTCGAACTCAAATCGCCATCGCGTGAGAATACAGACGTGTCG GAAGCTTATGCACAATTGCGTAACTATATGCAGGAGATTCCGTCACTCTTTATCTATAACGCTTTTTGTGTGATGAGCGA TCAGGCGATGACTAAGGCGGGGACGATCACAGCGGGTGAAGACCGTTTTATGCAGTGGAAAACGGTAGATGGGAGTTATG AAGATACCCATAGCGCGAATTTCGATGTGCTTTTCGCGGGAATGTTCGAAAAAACGCGGTTTGTTGAATTGTTGCGGAAT TTTGTTTGTTATTCGAAAGACGGTAAACAGGATATTAAGATATTAAGTGCCTATCATCAGTTTTATGCCGTACACAAGGC TGTGCTTTCGACGGTTAAAGCAGCTGAGACAGATGGTCGGGGTGGCGTGTTTTGGCATACGCAGGGCAGCGGAAAGTCAT TGTCGATGGTCTTTTTCGCCAAGCAGTTGCAGCAGGCGATGTCGTCGCCGACTATCGTCGTGCTGACAGACCGTAACGAT TTGGACGGTCAGTTGTACCGGCAGTTCGCTTGTTGCAGGGATTTTTTGCGTCAGACACCCGTGCAGGCCGAAAGTCGGGC TCATCTTCGGGAATTATTGGCGGGACGCGAAGCGAACGGTATCTTTTTCTCGACGATGCAGAAATTCGAAGAGAGCGAAG AACCTCTTTCGACGCGACGAAATATAGTTGTTATGGCCGACGAGGCGCATCGCAGTCAATACGGATTGGAGGAGAGGGTC AGGATGGTTACGGATGCTGACGGGGTAACGCAAGCCAAAGTTGTAATCGGCGCGGCGCGTCTGGTGCGTAATGCGTTGCC GAATGCTACCTATATCGGGTTTACCGGAACGCCTATTTCGCAAAAAGATCGGTCGACACGCGAAGTGTTTGGAGATTACA TCGACGTGTACGATATGACGCAGTCGGTGGAGGACGGTGCGACACGGCCGGTATTTTACGAGAGCCGTGTAATCAATCTG AAACTCGACGAGCAGTCCTTGCGGCGTATTGATGCGGAGTATGATGCGATGGCTGAGGAGGCGGAAGAGTATGTCATTGA GAAAAGCAAGCGTGAATTGGGGCGGCTCGACTCGATCCTTGGAGCTGACGCGACGGTGGCATCATTGTGCGAGGACATCG TAAAACACTATGAGGAATTCCGGCAATACGAGCAGACGGGTAAGGCGATGATAGTAGCCTATTCGCGGCCAATAGCGATC AAGATTTACCGTCGGATTCTCGAAATGCGTCCGGTGTGGAGTGACAAGCTGGCTGTTGTGATGACTTCCGGTAATAAAGA TCCGGAAGACTGGCGGGCGATTATTGGAAATGATTCCCACAAGAAAGAGTTGGAGAAGCGGTTCAAAGACAACGATAGCT CGTTGAAAATCGTCATCGTAGTTGATATGTGGCTTACGGGTTTCGACGTACCTTCGCTTTCGACGATGTATGTCTATAAA CCGATGTCCGGACACAATCTAATGCAGGCTATTGCTCGTGTGAATCGTGTGTTTGGGGATAAACAAGGTGGTTTGGTTGT GGATTATGTGGGTATCGCTTCGGCGTTGAAGACGGCGATGAACGATTATACATACCGTGACCGCAAAAATTATGGTGATA CGGATGTGGCTAAAACCGCCTATCCGGAGTTTCAGAAGAAACTGGACGTTTGCCGTGATCTGATGTATGGATTCGATTAT GGTGCTTTCTTCGGTAAGTCTGATTTGGAGCGGGCGAAAGCCATCAGCGGAGGTGTCGATTTCATGCAGTCCCCCGAGCG GATGGAAACGAAAAAACTCTATATCAAAGAGGCGCTGCTGCTGCGGCAGGCATTGTCGCTTTGTCAGAGTTTACTGAATT ATGAGCAACGTATCGAAGCTGCCTATTTTGAGGCGGTTCGCACATTACTGACGCGCGTGGAAGCCAAGGGCAAGATTTCG TTCCGTGAGATTAACGGGCGTATTAATGAATTGCTCAAGCAGAGTATCAAGAGCGAAGGGGTAATTAATCTTTTCTCCGA TATCAAGGAGGAGTTCTCTTTGTTCGATTCGAAATTCCTGGAAGAGGTTGCCCGGATGAAGGAACGGAACTTCGCCGTAG AATTATTGCGTAGGTTGATTGCAGAGCAGGTACAACTATATCAGCGAACGAATACGGTACGAGCCGAGAAGTTTTCGGAA ATTCTGGCCGATGCCATGAGCCGCTATTTGAAAGGGATGCTGACGAACGAAGAGGTTATCGAAGAACTGCTGAAAATAGC CCGTGAGATCGTTCACGGCGAAAAGGCCGGCAAGTCGCTTAATCTGAACAGCGAAGAACTTGCCTTTTATGATGCGTTGA CCAAGCCTGAGGCTGTAAAAGATTTCTATTCCAACGATCAGTTGGTCGCTATTACGCGAGAGTTGACAGATGCGCTTCGG CGAAACAAGACGATTGACTGGAATATGAAGGAGAGTGCTCGTGCCGGAATGCGGCGTATTGTCAAACGATTGTTGAAAAA GTATAATTATCCGCCTGCTGGGCAGGAAGATGCTTTGAATACGATTATGGAGCAGTGTAAGAAGTGGAACGAAAATAATT GA Protein sequence : MHFTEDDFENAILELFREQLGYDYVYGPNVMRDYAEPLYVEVLEAVLPQINRGLPQAAIDEAMVKIRTYEGGTLVQKNEL FTDYLQNGVAVNYFDGREQCSANVRLVDYDSPLHNRFTIANQWTVDGHSVRRADMIVFVNGLPLVVVELKSPSRENTDVS EAYAQLRNYMQEIPSLFIYNAFCVMSDQAMTKAGTITAGEDRFMQWKTVDGSYEDTHSANFDVLFAGMFEKTRFVELLRN FVCYSKDGKQDIKILSAYHQFYAVHKAVLSTVKAAETDGRGGVFWHTQGSGKSLSMVFFAKQLQQAMSSPTIVVLTDRND LDGQLYRQFACCRDFLRQTPVQAESRAHLRELLAGREANGIFFSTMQKFEESEEPLSTRRNIVVMADEAHRSQYGLEERV RMVTDADGVTQAKVVIGAARLVRNALPNATYIGFTGTPISQKDRSTREVFGDYIDVYDMTQSVEDGATRPVFYESRVINL KLDEQSLRRIDAEYDAMAEEAEEYVIEKSKRELGRLDSILGADATVASLCEDIVKHYEEFRQYEQTGKAMIVAYSRPIAI KIYRRILEMRPVWSDKLAVVMTSGNKDPEDWRAIIGNDSHKKELEKRFKDNDSSLKIVIVVDMWLTGFDVPSLSTMYVYK PMSGHNLMQAIARVNRVFGDKQGGLVVDYVGIASALKTAMNDYTYRDRKNYGDTDVAKTAYPEFQKKLDVCRDLMYGFDY GAFFGKSDLERAKAISGGVDFMQSPERMETKKLYIKEALLLRQALSLCQSLLNYEQRIEAAYFEAVRTLLTRVEAKGKIS FREINGRINELLKQSIKSEGVINLFSDIKEEFSLFDSKFLEEVARMKERNFAVELLRRLIAEQVQLYQRTNTVRAEKFSE ILADAMSRYLKGMLTNEEVIEELLKIAREIVHGEKAGKSLNLNSEELAFYDALTKPEAVKDFYSNDQLVAITRELTDALR RNKTIDWNMKESARAGMRRIVKRLLKKYNYPPAGQEDALNTIMEQCKKWNENN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 42 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 42 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 42 |
