Gene Information

Name : USDA257_c55550 (USDA257_c55550)
Accession : YP_006400827.1
Strain : Sinorhizobium fredii USDA 257
Genome accession: NC_018000
Putative virulence/resistance : Virulence
Product : iron transport system membrane protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5768839 - 5769693 bp
Length : 855 bp
Strand : +
Note : -

DNA sequence : 
ATGATGCCATCGCTCGATATGCTCCTTGCCGTCTTCGAATTCGAGTTCATGCGCAACGCCCTGCTGATCTCGGTTCTGGT
CGCGATCCCGACGGCGATGCTCTCCTGCTTCCTGGTGCTGAAGGGTTGGTCGCTGATGGGCGACGCGATCTCGCATGCGG
TTTTCCCGGGCGTCGTCCTCTCCTACATCGTCGGCCTGCCGCTTGCCGTCGGCGCCTTCGCCGCCGGCATGTGCTGCGCG
CTACTCACCGGCTATCTCAAGGAAAACAGCCGCATCAAGCAGGACACGGTGATGGGCGTCGTCTTTTCCGGCATGTTCGG
CCTTGGCCTGGTGCTCTACACCAGCATCCAGAGCGACGTGCATCTCGACCACATCCTCTTCGGCGACATGCTCGGCATCG
GCTGGGGCGACATCCTGGAGACGGGCCTGATCGCGCTTCTCGCCGCCGGCATCCTCTCCTTGAAATGGCGCGACCTGCTG
TTGCACGCCTTCGATCCGGGCCAGGCACGTGCGGTCGGCCTGCCGGTCGGGTGGCTGCATTACGGGCTGTTGGCAATCCT
GTCGCTAACGATCGTCGGCGCCTTGAAGGCCGTCGGTCTGATCCTCGCCATCGCCATGCTGATCGCCCCCGGGGCGATCG
CCTTCCTTCTAACGCGGACGTTTCGCTCCATGCTGATCGTCGCCGTCGTCGTCGCTGTCGCCGCCTCCTTCTCGGGCGTC
TATCTCTCCTTCTTCATCGACAGCGCCCCGGCCCCGACCATCGTCCTCCTGATGACGGCGATCTTCCTCTTGGCCTTCGC
CTATTCCACCTGGCGGACGGCGCGCATGGAAGCGCAGCGGACACGCGTGGAGTAG

Protein sequence : 
MMPSLDMLLAVFEFEFMRNALLISVLVAIPTAMLSCFLVLKGWSLMGDAISHAVFPGVVLSYIVGLPLAVGAFAAGMCCA
LLTGYLKENSRIKQDTVMGVVFSGMFGLGLVLYTSIQSDVHLDHILFGDMLGIGWGDILETGLIALLAAGILSLKWRDLL
LHAFDPGQARAVGLPVGWLHYGLLAILSLTIVGALKAVGLILAIAMLIAPGAIAFLLTRTFRSMLIVAVVVAVAASFSGV
YLSFFIDSAPAPTIVLLMTAIFLLAFAYSTWRTARMEAQRTRVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-80 68
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-80 68
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-80 68
sitD NP_461785.1 permease Virulence SPI-1 Protein 6e-81 68
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 5e-81 68

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
USDA257_c55550 YP_006400827.1 iron transport system membrane protein BAC0352 Protein 3e-81 68
USDA257_c55550 YP_006400827.1 iron transport system membrane protein BAC0442 Protein 3e-62 54
USDA257_c55550 YP_006400827.1 iron transport system membrane protein BAC0441 Protein 3e-38 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
USDA257_c55550 YP_006400827.1 iron transport system membrane protein VFG0528 Protein 3e-81 68