Gene Information

Name : yfeC (USDA257_c55540)
Accession : YP_006400826.1
Strain : Sinorhizobium fredii USDA 257
Genome accession: NC_018000
Putative virulence/resistance : Virulence
Product : chelated iron transport system membrane protein YfeC
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 5767985 - 5768842 bp
Length : 858 bp
Strand : +
Note : -

DNA sequence : 
ATGATCGCCCTGCTCGCCGAACCCTTCACCTATGGCTATATGCTGAATGCCATGTGGGTCAGCGCGCTTGTCGGCGCCGT
CTGCGCCTTCCTCTCGGCCTATCTGATGTTGAAGGGCTGGTCGCTGATCGGCGACGCGCTCTCCCATTCGATCGTCCCCG
GCGTTGCCGGCGCCTATATGCTGGGGCTCCCCTTCTCGCTCGGCGCCTTCTTCTCCGGTGCACTTGCCGCCGCCGCCATG
CTGTTCCTGAACCAGCGCACGCGGTTGAAGGAGGATACGATCATCGGCCTGATCTTCACCTCCTTCTTCGGCCTCGGCCT
CTTCATGGTGTCGCTGTCGCCGACCTCGGTGAACATCCAGACGATCGTGCTCGGCAACATCCTCGCCATCACCCCGGCCG
ACACGCTGCAGCTCGCCATCATCGGCATCGTTTCGCTCCTGATCCTGTCGGCGAAATGGAAAGACCTGATGGTGACCTTC
TTCGACGAAAGCCACGCCCGTTCGATCGGCATCAACACGACGCTCATCAAGGTGCTGTTTTTCACGCTGCTCTCGGCTTG
CACCGTGGCGGCACTTCAGACGGTCGGCGCCTTTCTCGTAATCGCCATGGTCGTGACGCCCGGCGCCACCGCCTATCTGC
TCACCGACCGCTTCCCCCGCCTCATCCTGATCAGCATCGTGATTGGCGCCCTGACGAGCTTCGTCGGCGCCTATGCGAGC
TATTTCCTCGATGGTGCAACCGGCGGCATCATCATCGTGCTGCAGACTGCGATCTTCCTGCTCGCCTTCGTGCTTGCTCC
GAAACATGGGCTGCTCGCCGCGCGCCGCCGCGCATCCGAGGCGCTGGAGACCGCATGA

Protein sequence : 
MIALLAEPFTYGYMLNAMWVSALVGAVCAFLSAYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFSLGAFFSGALAAAAM
LFLNQRTRLKEDTIIGLIFTSFFGLGLFMVSLSPTSVNIQTIVLGNILAITPADTLQLAIIGIVSLLILSAKWKDLMVTF
FDESHARSIGINTTLIKVLFFTLLSACTVAALQTVGAFLVIAMVVTPGATAYLLTDRFPRLILISIVIGALTSFVGAYAS
YFLDGATGGIIIVLQTAIFLLAFVLAPKHGLLAARRRASEALETA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-85 78
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 1e-85 78
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-85 78
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-85 78
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-85 78

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeC YP_006400826.1 chelated iron transport system membrane protein YfeC BAC0351 Protein 6e-86 78
yfeC YP_006400826.1 chelated iron transport system membrane protein YfeC BAC0441 Protein 2e-75 69

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
yfeC YP_006400826.1 chelated iron transport system membrane protein YfeC VFG0527 Protein 6e-86 78