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Name : tetA (USDA257_c40100) Accession : YP_006399311.1 Strain : Sinorhizobium fredii USDA 257 Genome accession: NC_018000 Putative virulence/resistance : Resistance Product : tetracycline resistance protein, class C Function : - COG functional category : - COG ID : - EC number : - Position : 4189090 - 4190433 bp Length : 1344 bp Strand : + Note : - DNA sequence : ATGTTCTGTCTCCGTTTTGGCGGACAGCGGAGAGGAAGCTTCATGCTCGACAAGAAATTCGCGCGACGTGGCCTGTTCCT TGTCTTTCTGATTCTGCTTCTCGACATCATGGGCATCGCCATCATCGTGCCGGTGCTGCCCAGCTATCTCCAGGAACTGA CCGGAACGAGTGTCGGCGAGGCCGCCATCGAGGGCGGTTGGCTGCTGCTCGTCTATTCGGCGATGCAGTTTCTCTTTGCA CCGCTGATCGGCAATTTGAGCGACCGGTTTGGACGCCGGCCGATTCTGCTGGCCTCCGTGCTGACTTTCGCGATTGACAA CCTGATCTGCGCTCTGGCAACCAGCTACTGGATGCTGTTTGTCGGCCGCATTCTTGCCGGCATCAGTGGCGCGAGCTTTG GAACGGCGTCCGCCTTCATCGCCGACGTCAGCGACGACAGCAACCGCGCCAGGAACTTCGGGCTGATCGGCATCGCCTTC GGCACGGGCTTCGCGCTCGGTCCGGTAATCGGCGGCTTGCTCGGCGAACTTGGCCCGCGTGTTCCCTTTTATGGGGCGGC TGGCCTGTCCTTTGTCAACTTCGCCATCGGCGTGTTCCTTCTCCCCGAGACGCTTGATCCGGCAAATCGGCGCCGCTTCG AGTGGCGCCGGGCAAACCCGCTCGGCGCGCTGAAGCAGATGCGCAACTATCCCGGCATTGGCTGGGTGGGTCTCGTCTTC TTTCTTTACTGGCTCGCCCATGCCGTCTATCCGGCGGTCTGGTCCTTCGTTTCCTCCTACCGCTACGGCTGGAGCGAGGG GCAGATCGGGCTGTCGCTCGGCATCTTCGGCGTCGGCGGCGCCGTTGTGATGGCGGTCGTCTTGCCGCGCGTCGTGTCTA GATTTGGCGAGCGAAGAACGGCAACGCTTGGTCTTATCTTTACCGCGCTTGGCATGGCAGGCTACGCCGCAGCCTGGGAG GGCTGGATGGTTTATGTCGTGATCGTCGCGACAGCGCTCGAAAGTCTCGCCGATCCGCCCTTGCGCAGCATCGCGTCGGC CCAGGTGCCGCCCTCGGCGCAGGGCGAACTACAAGGAGCTCTCACCAGCATTTCGAGCATAACGACGATTCTAGGACCGC TTCTTTTCACGCAGATCTTTGCCGTCTTCACAGGCCCGGCAACGGCCTATTCGTTCTCCGGCGCCCCTTACGCGGTGGCG GCGTGCCTGATCGTCGCAAGCCTGGCCGTCTTCCTGTTGCGGGTGCGCACCGTCCGAGGCAATGCGTTCCAGAATATCGT GCCGACTCCAATCGACGCTCCGCGTGGACAGGTCACGCCGCGATCGCAAGCGCCTGCGGATTGA Protein sequence : MFCLRFGGQRRGSFMLDKKFARRGLFLVFLILLLDIMGIAIIVPVLPSYLQELTGTSVGEAAIEGGWLLLVYSAMQFLFA PLIGNLSDRFGRRPILLASVLTFAIDNLICALATSYWMLFVGRILAGISGASFGTASAFIADVSDDSNRARNFGLIGIAF GTGFALGPVIGGLLGELGPRVPFYGAAGLSFVNFAIGVFLLPETLDPANRRRFEWRRANPLGALKQMRNYPGIGWVGLVF FLYWLAHAVYPAVWSFVSSYRYGWSEGQIGLSLGIFGVGGAVVMAVVLPRVVSRFGERRTATLGLIFTALGMAGYAAAWE GWMVYVVIVATALESLADPPLRSIASAQVPPSAQGELQGALTSISSITTILGPLLFTQIFAVFTGPATAYSFSGAPYAVA ACLIVASLAVFLLRVRTVRGNAFQNIVPTPIDAPRGQVTPRSQAPAD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tetA | YP_006098396.1 | tetracycline resistance protein | Not tested | Tn2411 | Protein | 1e-47 | 41 |
| tetA(A) | ACK44537.1 | TetA(A) | Not tested | SGI1 | Protein | 9e-48 | 41 |
| tetA(A) | AGK07027.1 | TetA(A) | Not tested | SGI1 | Protein | 9e-48 | 41 |
| tetA(A) | AGK07085.1 | TetA(A) | Not tested | SGI1 | Protein | 9e-48 | 41 |
| tetA(A) | ACN81011.1 | TetA(A) | Not tested | AbaR5 | Protein | 7e-48 | 41 |
| tetA | CAJ77066.1 | Tetracycline resistance protein | Not tested | AbaR1 | Protein | 6e-48 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| tetA | YP_006399311.1 | tetracycline resistance protein, class C | NC_011586.7045189.p0 | Protein | 1e-45 | 41 |
| tetA | YP_006399311.1 | tetracycline resistance protein, class C | X75761.gene.p01 | Protein | 2e-47 | 41 |
| tetA | YP_006399311.1 | tetracycline resistance protein, class C | NC_010410.6002597.p0 | Protein | 3e-48 | 41 |
| tetA | YP_006399311.1 | tetracycline resistance protein, class C | CP001485.1.gene2821. | Protein | 3e-48 | 41 |
| tetA | YP_006399311.1 | tetracycline resistance protein, class C | AF534183.gene.p01 | Protein | 3e-48 | 41 |
