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Name : virD4 (USDA257_c29440) Accession : YP_006398272.1 Strain : Sinorhizobium fredii USDA 257 Genome accession: NC_018000 Putative virulence/resistance : Virulence Product : type IV secretion system-coupling protein VirD4 Function : - COG functional category : - COG ID : - EC number : - Position : 3083864 - 3085774 bp Length : 1911 bp Strand : - Note : - DNA sequence : ATGGCAATAAGGGCAAGACCGCATCCGAGCCTGTTGCTCATTCTCTTGCCCGTCGCCGTCACCACCTTTGCGGTCTATGT CGTCGGCTGCCGCTGGCCGGGGCTCGCCGCCGGCATGTCGGGCAAGACGGCATATTGGTTCCTTCGGGCATCGCCCGTGC CGGCGCTTTTGTTCGGGCCGCTCGCCGGCCTTTTGGCCGTTTGGGCCTTGCCATTGCACCGGCGAAGGCCGGTGGCGATG GCGAGCCTCGCCTGTTTTCTGACGGTCGCCGGCTTCTACGCGCTGCGTGAATTCGGCCGCCTGTCCCCGTCCGTGGAAAG CGGCGCATTATCATGGGACCGGGCGCTCTCCTATCTCGACATGGTCGCCGTCATCGGCGCGGTCACTGGTTTCATGGCAG TAGCGGTCTCCGCCCGCATCTCCATCGTCGTGCCCGAACCGATGAAGCGTGCCAAGCGCGGTATCTTCGGAGACGCCGCC TGGCTGCCGATGTCGGCGGCGGCAAGGCTGTTCCCGGATGACGGCGAGATCGTCGTCGGCGAACGATACCGCGTCGACAA GGATATCGTCCATGAACTGCCGTTCGATCCGAACGATAGCAGCACATGGGGAAAGGGCGGCAAAGCCCCTTTGCTCACCT ACAAGCAGGACTTCGATTCCACGCATATGCTGTTCTTTGCCGGGTCGGGGGGATACAAGACGACCAGCAACGTCGTGCCG ACGGCGCTGCGCTACAGCGGACCGCTGATCTGCCTCGATCCCTCGACCGAGGTCGCGCCAATGGTGGTCGAGCACCGAAC CCGCGTCCTTGGCCGCGAGGTGATGGTGCTCGATCCGACAAATCCGATCATGGGCTTCAATGTGCTCGACGGGATCGAGA ACTCGCGGCAAAAGGAGGAGGATATTGTCGGTATCGCGCACATGCTGCTGTCGGAAAGCGTGCGCTTCGAAAGCTCGACC GGATCCTATTTCCAGAACCAGGCGCACAATCTCCTGACCGGCCTGCTCGCGCATGTGATGCTGTCGCCCGAATATGCCGG ACGGCGAAACTTGCGCTGTCTCCGGAAGATCGTTTCCGAGCCGGAACCCTCGGTGCTCGCGATGCTGCGCGACATTCAGG AGCATTCCGCGTCCGTCTTCATCCGCGAAACGCTTGGCGTTTTCACCAACATGACCGAGCAGACGTTCAGTGGCGTCTAT TCGACCGCCTCGAAGGATACGCAGTGGCTGTCACTCGACAGTTACGCCGCCCTTGTTTGCGGCCGCGCCTTCGAGTCGAG CGATATCGTATCAGCCAAAAAGGACGTGTTCCTGAACATCCCGGCGTCAATCCTGCGCTCTTATCCGGGCATCGGCCGCG TCATCATCGGGTCGCTGATCAATGCCATGATACGGGCAGACGGCGCATTCGAGCGCCGCGCTCTCTTCATGCTGGATGAG GTCGACCTTCTCGGCTACATGCGCGGGCTCGAGGAGGCGCGCGACCGCGGCCGCAAGTACGGCATCACGATGATGCTGAT GTACCAGTCGGTCGGGCAGATGGAGCGGCATTTCGGGAAAGACGGCGCGACGTCGTGGATCGACGGCTGCGCTTTTGCCT CCTATGCCGCGATCAAGGCGCTCGACACGGCGCGCAACGTCTCGGCGCAGTGCGGCGAAATGACGGTGGAGGTGAAGGGA AGCTCCCGCAACATCGGCTGGAACACAAAGAACAGCGCCTCGCGCAAATCGGAAAGCGTCAACTTCCAGCGCCGGCCGCT GATCATGCCGCACGAGATCACCCAATCCATGCGCAAGGATGAACAGATCGTCATCGTGCAGGGCAATAGTCCGATACGCT GCGGGCGGGCGATCTACTTCCGGCGGAAGGAGATGGATCAGGCTGCCAAGGCCAACCGCTTCGTCAAGTGA Protein sequence : MAIRARPHPSLLLILLPVAVTTFAVYVVGCRWPGLAAGMSGKTAYWFLRASPVPALLFGPLAGLLAVWALPLHRRRPVAM ASLACFLTVAGFYALREFGRLSPSVESGALSWDRALSYLDMVAVIGAVTGFMAVAVSARISIVVPEPMKRAKRGIFGDAA WLPMSAAARLFPDDGEIVVGERYRVDKDIVHELPFDPNDSSTWGKGGKAPLLTYKQDFDSTHMLFFAGSGGYKTTSNVVP TALRYSGPLICLDPSTEVAPMVVEHRTRVLGREVMVLDPTNPIMGFNVLDGIENSRQKEEDIVGIAHMLLSESVRFESST GSYFQNQAHNLLTGLLAHVMLSPEYAGRRNLRCLRKIVSEPEPSVLAMLRDIQEHSASVFIRETLGVFTNMTEQTFSGVY STASKDTQWLSLDSYAALVCGRAFESSDIVSAKKDVFLNIPASILRSYPGIGRVIIGSLINAMIRADGAFERRALFMLDE VDLLGYMRGLEEARDRGRKYGITMMLMYQSVGQMERHFGKDGATSWIDGCAFASYAAIKALDTARNVSAQCGEMTVEVKG SSRNIGWNTKNSASRKSESVNFQRRPLIMPHEITQSMRKDEQIVIVQGNSPIRCGRAIYFRRKEMDQAAKANRFVK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| virD4 | YP_001610010.1 | conjugal transfer coupling protein TraG | Not tested | Not named | Protein | 3e-161 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| virD4 | YP_006398272.1 | type IV secretion system-coupling protein VirD4 | VFG2242 | Protein | 7e-166 | 52 |
