Gene Information

Name : virB10 (USDA257_c29270)
Accession : YP_006398255.1
Strain : Sinorhizobium fredii USDA 257
Genome accession: NC_018000
Putative virulence/resistance : Virulence
Product : type IV secretion system protein VirB10
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3068806 - 3069978 bp
Length : 1173 bp
Strand : +
Note : -

DNA sequence :
ATGGTCCAGGAAGACGCGGGCCGGATACCGGGCGAGCGCGCCGAAACGGTTGCGGGCAGGCGGGTCGACAACAATCCCGT
CTTGAAGCGGGGCGCTGTGGCGCTGGCCATCGTTGCCTTTGTCGCCTTCGCGCTCTGGTCGGTGAGCGGCGAGAAGCCGC
CTTCGGACACCACAAGGCCGGAGCGGGTCGTCATCCGGCAGACGACGAATTTCGAACCGGTCAAGGAAAAGATCGAGCCG
GTCCAGCCAGAGCCGGAAGTGAAGCTGCCGACGCCGGTTGTGGCCGAGCAGGTGAAGGAGGAAGATCCGTTGCTCGATTC
CGCCCGCCGCGCACCCGTCATGGCCTATAGCGCTGGACAGAAAAACGCGACAGCGCATGGGAATCGCGAAGAGTCTGCGG
TCTCTCCGGACGGAAATTTCCTGCCGCTCGATGGCAATACGATGGGTCAAAACACCGCCAGCAGCAATGAGGAGCAGTTC
AAGACAATGCTGCGGCCGACCCGGCTCGAGGGCTCGCGCGCCGGCACGCTAGGCAACCGCGACTTCATCGTCGCCATGGG
CACCTCGATCCCGTGCGTGCTGGAAACGGCCATGGCGTCGGACCAGCCGGGGTTCACGAGCTGCGTCATCAACCGGGATG
TTCTCTCGGACAACGGCCGCGTCGTGCTGATGGAGAGGGGAACTCAGATTGTCGGCGAGTACCGAGGCGGCCTCCAGCGG
GGGCAGAAACGCCTCTTTGTGCTTTGGAACCGCGCGAAGACCCCGAACGGCGTCATCGTCACGCTGGCTTCGCCCGCGAC
CGATGCACTCGGCCGGGCTGGCATGGACGGATATGTCGATACCCACTGGTGGGAGCGCTTCGGAAGTGCGCTTCTCCTCT
CTGTCGTCGGTGATGCTGCAGGCTACGCCAACAGCCGTCTGAAGGACAGCGACGTCGACGCGCAGGGTACCACAAGCGCC
GGCCAGCAGGCCGCGGCGATTGCCGTCGAGCAATCGATCAATATCCCTCCGACGCTCATGAAGCATCAGGGCGAGCTTGT
TTCGATCTTCGTCGCGCGCGATCTCGACTTCTCCGGGGTCTACAGGCTTCGCGTGATTGGGCCAAAGAACCGCATTCTCG
ACCGGGCGGTACTGGGCGACTTCAGCCCGCAGTCGACGCTCGTGACAAAATAG

Protein sequence :
MVQEDAGRIPGERAETVAGRRVDNNPVLKRGAVALAIVAFVAFALWSVSGEKPPSDTTRPERVVIRQTTNFEPVKEKIEP
VQPEPEVKLPTPVVAEQVKEEDPLLDSARRAPVMAYSAGQKNATAHGNREESAVSPDGNFLPLDGNTMGQNTASSNEEQF
KTMLRPTRLEGSRAGTLGNRDFIVAMGTSIPCVLETAMASDQPGFTSCVINRDVLSDNGRVVLMERGTQIVGEYRGGLQR
GQKRLFVLWNRAKTPNGVIVTLASPATDALGRAGMDGYVDTHWWERFGSALLLSVVGDAAGYANSRLKDSDVDAQGTTSA
GQQAAAIAVEQSINIPPTLMKHQGELVSIFVARDLDFSGVYRLRVIGPKNRILDRAVLGDFSPQSTLVTK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
virB10 YP_001610006.1 VirB10 protein Virulence Not named Protein 2e-83 52
vblB10 YP_001610350.1 VblB10 protein Virulence Not named Protein 2e-73 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
virB10 YP_006398255.1 type IV secretion system protein VirB10 VFG2239 Protein 2e-82 53