Gene Information

Name : kpsT (USDA257_c28790)
Accession : YP_006398207.1
Strain : Sinorhizobium fredii USDA 257
Genome accession: NC_018000
Putative virulence/resistance : Virulence
Product : polysialic acid transport ATP-binding protein KpsT
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 3027960 - 3028619 bp
Length : 660 bp
Strand : -
Note : -

DNA sequence : 
ATGATCCGGTTCGAGCAGGCGACGAAATACGCCCGCACCAAGGGCATCAAGAAGCCGATCATCGAGGATGCATCGCTGAC
GATCAATCGTGGCAAGAGCGTCGGTCTGCTCGGCCGCAACGGCGCCGGCAAGTCGACGTTGCTCCGGCTAATCGCCGGCG
CGATCAGGCTCGACAAGGGGCGAATCATCCGCCGCGGCAAGATCTCCTGGCCGCTTGGATTCCAGGGTAGCTTCCAGAGT
TCATTGACGGGCGAACAGAATGTACGTTTTGTCGCCCGCATCTACGGTGTAAACACCGAAGAACTCATCACCTATGTCGA
GGATTTCGCCGAGCTCGGCCCTTTCTACAAGGCACCGGTCGGCACCTATTCCTCCGGCATGAAGGCGCGGCTCGCCTTCG
GCTTGAGCATGGGCGTCAACTTCGACTATTATCTCGTCGACGAAATCACCGCGGTTGGTGACTCAAATTTTAAGAAAAAG
TGCCAAGCTGTCTTCGAGACCAAGCTTCAGAATTCCGATTTGATCATGGTTTCGCACAGCACCGGTACAATCCGCACCTA
TTGCGATTGCGGAGTCGTGCTGGAAAAAGGCAAGCTGACTTATTATGAAGATGTCGAGGACGCGATCCGTGCGCACGACA
TAAACATGAAGGAAAGTTGA

Protein sequence : 
MIRFEQATKYARTKGIKKPIIEDASLTINRGKSVGLLGRNGAGKSTLLRLIAGAIRLDKGRIIRRGKISWPLGFQGSFQS
SLTGEQNVRFVARIYGVNTEELITYVEDFAELGPFYKAPVGTYSSGMKARLAFGLSMGVNFDYYLVDEITAVGDSNFKKK
CQAVFETKLQNSDLIMVSHSTGTIRTYCDCGVVLEKGKLTYYEDVEDAIRAHDINMKES

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsT CAE85223.1 KpsT protein Virulence PAI V 536 Protein 2e-47 50
kpsT YP_854396.1 polysialic acid transport ATP-binding protein KpsT Not tested PAI I APEC-O1 Protein 1e-49 49
ctrD NP_273138.1 capsule polysaccharide export ATP-binding protein CtrD Not tested IHT-A Protein 2e-45 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kpsT YP_006398207.1 polysialic acid transport ATP-binding protein KpsT VFG1449 Protein 4e-50 49
kpsT YP_006398207.1 polysialic acid transport ATP-binding protein KpsT VFG0258 Protein 7e-46 48
kpsT YP_006398207.1 polysialic acid transport ATP-binding protein KpsT VFG0696 Protein 5e-46 46
kpsT YP_006398207.1 polysialic acid transport ATP-binding protein KpsT VFG2563 Protein 7e-47 46