Gene Information

Name : siaP2 (USDA257_c27880)
Accession : YP_006398116.1
Strain : Sinorhizobium fredii USDA 257
Genome accession: NC_018000
Putative virulence/resistance : Virulence
Product : sialic acid-binding periplasmic protein SiaP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2928662 - 2929633 bp
Length : 972 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAACGGGACTGATTTCACTGGCCCTCGCGGGCCTGCTGATGGCGTCGCAAGCCTCGGCTCAGGAGACGCGTACGCT
GCGGCTGGGGATGCAGGGCACCGCCGGCGATCCGCAATTCGAGGGTGTCACGGAGGCGGCGCGGATCATCAAGGAGAAAT
CGAGCGGTCGGTTGACGCTGGAAATCTTTCCCAATTCCCAACTCGGTACCTTCAGCGAAATGATGGAACAGGTCACCCTC
GGCGAGCTCGACTTCACGCTCAATCCGTTCGGGGGGATGGACGCCTGGGTTCCCCGCGCTGTGGTGGCCAGCACCGCTTA
TGTGGTTGGTGACTTCGATCACCTTCAAAAGATCATCGCCTCGGATTGGGGTAAGGGAATCGTCGAGGAGATGCGAACCG
AGCACAAGTGGCGAACGGTCGACTCCTGGTATTTCGGAACGCGGCACACGACGGCGAAAAAGCCGATCGAAAAGCCCGCC
GACTTCGCCGGCATGAAGTTGCGCGTTCCCAACTCGGCGCCGCTTCTCACCTGGGCGAAGGCGATGGGCGCCAGCCCGAC
GCCCGTGGCTTTCGCGGAAGTCTATCTGGCGCTTCAAACCAACCAGGTCGACGGCCAGGAGAACCCGTTGCCGATCATTG
ACTCGATGAAGTTCACCGAGGTGCAATCACATGTCTCGTTGACCGGACATCTAGTGCAAGACCAGCTCATCCTCATGTCG
GAAGATACATGGAACGCGCTCGAACCGGCTGACCAGCAGGTCGTGATGGAGGCCTTCGAGGCGGGCGGCGTCCTCAACAA
CAAACTCGTCAATGAAAAGGAAGCGAGCCTCGTCAGCGCTTTCCGCGAGCGCGACATCACCGTAGTCGAGCCGGACAAGG
CGGCTTTTCGGGAGGCCATGAAGCCTGTCTATGCCGATCTCGACGCAAAGTTCGGTGCCGGCACAGTGCAGACGCTCCTC
GATCTCCGTTAG

Protein sequence : 
MKTGLISLALAGLLMASQASAQETRTLRLGMQGTAGDPQFEGVTEAARIIKEKSSGRLTLEIFPNSQLGTFSEMMEQVTL
GELDFTLNPFGGMDAWVPRAVVASTAYVVGDFDHLQKIIASDWGKGIVEEMRTEHKWRTVDSWYFGTRHTTAKKPIEKPA
DFAGMKLRVPNSAPLLTWAKAMGASPTPVAFAEVYLALQTNQVDGQENPLPIIDSMKFTEVQSHVSLTGHLVQDQLILMS
EDTWNALEPADQQVVMEAFEAGGVLNNKLVNEKEASLVSAFRERDITVVEPDKAAFREAMKPVYADLDAKFGAGTVQTLL
DLR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC1779 NP_231414.1 C4-dicarboxylate-binding protein Not tested VPI-2 Protein 9e-69 44
dctP-1 YP_001217320.1 C4-dicarboxylate-binding periplasmic protein Not tested VPI-2 Protein 9e-69 44
VPI2_0027c ACA01844.1 C4-dicarboxylate-binding periplasmic protein Not tested VPI-2 Protein 8e-69 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
siaP2 YP_006398116.1 sialic acid-binding periplasmic protein SiaP VFG1112 Protein 4e-69 44