Gene Information

Name : lolD1 (USDA257_c26740)
Accession : YP_006398005.1
Strain : Sinorhizobium fredii USDA 257
Genome accession: NC_018000
Putative virulence/resistance : Resistance
Product : lipoprotein-releasing system ATP-binding protein LolD
Function : -
COG functional category : -
COG ID : -
EC number : 3.6.3.-
Position : 2804331 - 2805002 bp
Length : 672 bp
Strand : -
Note : -

DNA sequence : 
ATGAACGTGCTCATCGAGACCGAGAACCTGACGCGCGTCCTGCCGGAGACCGTTCCCGTCACGCTGGTTAGAAATGTCTC
GCTATCGATCGGCGAGAACGAGTTCGTCGCCATCACGGGGCCGTCCGGGTCGGGCAAATCCTCCCTCCTCTACCTGCTCG
GCCTGCTCGACCGGCCGACAAGCGGCACACTCAGAATTGCCGGCCGCGATACCGAGCCGATGGATGAGCGCGAGCGGGCA
GCCACGCGGCTCTCCAAACTCGGCTTCGTCTTTCAGTTTCACTTTCTCTTGCCGGAATTCACGGCGCGCGAGAACGTCGA
GATTCCGATGCGCAGGCTCGGGCGACTGGCCCGGGGGCAAATGCGGGAGCGAGCCGGCGAATTGCTCACCTCGCTGGGAC
TGGGGGAACACCTCGACAAGCGGCCTGACCAGCTTTCCGGCGGACAGCGCCAGCGCGTGGCGGTCGCGCGCGCGCTCGCT
AACGATCCTTCGCTGATCCTCGCCGACGAGCCGACAGGCAGCCTCGATAGCCATAGCTCAGAGCAGGTTTTCAGGATACT
CGAAGGTCTGGTGCGCGATCGCGGCAAGACGGTCGTGGCAGTCACACACGATCTCGAGATTGCCGAGCGAATGGACCGGA
GAATCCAGCTTATCGACGGCAAGATTAACTAA

Protein sequence : 
MNVLIETENLTRVLPETVPVTLVRNVSLSIGENEFVAITGPSGSGKSSLLYLLGLLDRPTSGTLRIAGRDTEPMDERERA
ATRLSKLGFVFQFHFLLPEFTARENVEIPMRRLGRLARGQMRERAGELLTSLGLGEHLDKRPDQLSGGQRQRVAVARALA
NDPSLILADEPTGSLDSHSSEQVFRILEGLVRDRGKTVVAVTHDLEIAERMDRRIQLIDGKIN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Spaf_1862 YP_006310627.1 amino acid ABC transporter ATP-binding protein Not tested FWisland_2 Protein 1e-14 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD1 YP_006398005.1 lipoprotein-releasing system ATP-binding protein LolD NC_008702.1.4606598. Protein 6e-24 48
lolD1 YP_006398005.1 lipoprotein-releasing system ATP-binding protein LolD NC_012469.1.7686878. Protein 4e-21 46
lolD1 YP_006398005.1 lipoprotein-releasing system ATP-binding protein LolD CP001581.1.gene798.p Protein 5e-16 42