Gene Information

Name : USDA257_c23740 (USDA257_c23740)
Accession : YP_006397708.1
Strain : Sinorhizobium fredii USDA 257
Genome accession: NC_018000
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2488704 - 2489357 bp
Length : 654 bp
Strand : +
Note : -

DNA sequence : 
ATGATCGCTCTCCGCAATCTTAGTAAATCCTATGAGACTGCCGAAGGGCGGCTTGACGTGCTGAGAGGGATCGATCTCGA
TCTCGGCGCAGGAGATAGCGTTGCCCTCACAGGGGAGTCTGGTAGCGGTAAGAGCACCCTCCTGCATCTCGTAGCCGGCC
TAGACCGCCCGGACGCAGGCGAGATCATGATCGGGGGTCGAGACATCTCCAAGCTGGATGACAGCGGTCGCGCCGCCTAC
AGGCGAACCGAAGTTGGCCTGGTGTTTCAGCAGTTCAACCTTATACCCTCACTGGACGTGGCGGCGAACATAGCCTTCCA
CGCTAAGCTCGCCGGACGCCATGATCCCACGTGGGAAAATGAACTCGCGGAGCGCCTCGGGGTCGGGACATTGCTGACCA
GATATCCAGAGCAGCTTTCCACTGGCCAACAGCAGCGGGTGGCGATCGGACGGACCCTTGCCGCACGTCCCGGCTTGGTT
CTGGCAGACGAACCCACAGGAAATCTGGACGAGGCTAACGGAGACGCTGTCCTGGATCTGATGCTCTCGCTTGCGAAGGG
AACGGGATCGACGCTGCTCATGGTGACGCATTCGCAAAAGCTCGCGGACAGGCTCGACCGACAGGTGCATTTGCGGTCGG
GGAAGATCGCATGA

Protein sequence : 
MIALRNLSKSYETAEGRLDVLRGIDLDLGAGDSVALTGESGSGKSTLLHLVAGLDRPDAGEIMIGGRDISKLDDSGRAAY
RRTEVGLVFQQFNLIPSLDVAANIAFHAKLAGRHDPTWENELAERLGVGTLLTRYPEQLSTGQQQRVAIGRTLAARPGLV
LADEPTGNLDEANGDAVLDLMLSLAKGTGSTLLMVTHSQKLADRLDRQVHLRSGKIA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 3e-33 43
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 5e-34 43
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-34 43
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 5e-34 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
USDA257_c23740 YP_006397708.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 5e-40 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
USDA257_c23740 YP_006397708.1 ABC transporter ATP-binding protein VFG2059 Protein 2e-19 41