Gene Information

Name : USDA257_c21640 (USDA257_c21640)
Accession : YP_006397503.1
Strain : Sinorhizobium fredii USDA 257
Genome accession: NC_018000
Putative virulence/resistance : Virulence
Product : translocation protein y4yL
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2258361 - 2259014 bp
Length : 654 bp
Strand : +
Note : -

DNA sequence : 
ATGGGTGAGACGACCACCAATCTCATCCCGATCATCATCATCGTCTCGACGATCGGGCTCATCCCGCTCGCCGTGGTGAC
GATGACCGGGTTCCTGAAAATCTCGATCGTCCTGTTTCTGATCCGCAACGCGCTCGGCATCCAGCAATCGCCGCCCAATC
TGGTGCTTTATGGCGTGGCGCTGATCCTCACCGTCTATGTGACGACGCCGCTCGTCGGTGAAATGTACCGGACGCTCTCG
AGCGAACAGGTCGACGTGCAATCGATGGACAGCATGGTGCGGGCGGCCGATCAGCTCAGGGCGCCGCTGCAGGCGCACCT
TACCCGCTACACGGATGAGAACGAGCGCCAGTTCTTCCTGCAGGCAACCGAGCGCATCTGGTCGGAGGAAGCGAGAGCCT
CGGTGAAGACCGACAGCCTGCTAATTCTCGTTCCCGCCTTCGTCAGTTCGGAGCTGACCCGCGCCTTCGAGATCGGCTTC
CTGCTCTACCTGCCGTTCCTGGTGATCGATCTCATCGTCTCGACCGTGCTGATGGCAATGGGGATGATGATGGTCTCGCC
GACGCTGATCTCCATTCCGCTGAAGATATTCCTCTTCGTCGCGGTCAACGGCTGGTCGCGGCTGATGCACGGCCTAATCC
TGAGCTACGGGTAG

Protein sequence : 
MGETTTNLIPIIIIVSTIGLIPLAVVTMTGFLKISIVLFLIRNALGIQQSPPNLVLYGVALILTVYVTTPLVGEMYRTLS
SEQVDVQSMDSMVRAADQLRAPLQAHLTRYTDENERQFFLQATERIWSEEARASVKTDSLLILVPAFVSSELTRAFEIGF
LLYLPFLVIDLIVSTVLMAMGMMMVSPTLISIPLKIFLFVAVNGWSRLMHGLILSYG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
lscR AAO18040.1 LscR Virulence TTSS locus Protein 8e-45 50
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 5e-43 47
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 4e-43 47
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 7e-42 47
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 7e-42 47
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 7e-42 47
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 3e-42 47
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 2e-37 46
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 3e-38 45
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 5e-43 45
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 5e-43 45
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 2e-43 45
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 2e-43 45
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 1e-43 45
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 5e-37 45
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 4e-37 45
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 7e-38 45
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-43 45
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-38 45
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 3e-38 45
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-38 45
escR AAC38369.1 EscR Virulence LEE Protein 2e-38 45
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-38 45
escR AAK26700.1 EscR Virulence LEE Protein 2e-38 45
escR AAL57527.1 EscR Virulence LEE Protein 2e-38 45
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-38 45
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-38 45
escR AAC31528.1 L0049 Virulence LEE Protein 2e-38 45
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 3e-38 45
unnamed AAL06354.1 EscR Virulence LEE Protein 3e-37 45
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-43 44
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 7e-36 44
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 7e-36 44
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 8e-38 44
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 5e-38 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 2e-37 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 2e-37 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 7e-38 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 7e-38 41
ysaR AAS66846.1 YsaR Not tested SSR-1 Protein 2e-35 41
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 1e-29 41
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 1e-29 41
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 5e-30 41
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 5e-30 41
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-33 41
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
USDA257_c21640 YP_006397503.1 translocation protein y4yL VFG0044 Protein 5e-51 52
USDA257_c21640 YP_006397503.1 translocation protein y4yL VFG0188 Protein 1e-45 50
USDA257_c21640 YP_006397503.1 translocation protein y4yL VFG0394 Protein 1e-43 48
USDA257_c21640 YP_006397503.1 translocation protein y4yL VFG0827 Protein 8e-39 45
USDA257_c21640 YP_006397503.1 translocation protein y4yL VFG0715 Protein 1e-38 45
USDA257_c21640 YP_006397503.1 translocation protein y4yL VFG2455 Protein 1e-34 43
USDA257_c21640 YP_006397503.1 translocation protein y4yL VFG1773 Protein 4e-39 43
USDA257_c21640 YP_006397503.1 translocation protein y4yL VFG0519 Protein 2e-38 41
USDA257_c21640 YP_006397503.1 translocation protein y4yL VFG0551 Protein 2e-30 41
USDA257_c21640 YP_006397503.1 translocation protein y4yL VFG1259 Protein 8e-32 41