Gene Information

Name : USDA257_c20740 (USDA257_c20740)
Accession : YP_006397413.1
Strain : Sinorhizobium fredii USDA 257
Genome accession: NC_018000
Putative virulence/resistance : Unknown
Product : hypothetical protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2171308 - 2171634 bp
Length : 327 bp
Strand : +
Note : -

DNA sequence :
ATGGTCGCCACCCGGCCTGTCGACTTTCGCAAAGGTGCGGAGGGCCTGGCGGCGTTGGTCAAGGCAGAGATGGGTGCTGA
CCCGTTCTCCGGCACGATCTACGTGTTCAGAGCCAAGCGGGCAGACCGGATCAAGCTCGTCTTCTGGGATGGCAGCGGCG
TGTGCCTGGTGTCCAAGCGGCTTGAGGATGGCGAGTTCCATTGGCCCCGGATGCAGGATGGTGCGATGCGTCTGACGGCC
GCTCAGTTCTCAGCATTGTTCGAGGGGCTGGATTGGAAGCGCGTTCATGCACCAATCGAGGCGCGTGTTCCGGAGAAGGC
GGGATAG

Protein sequence :
MVATRPVDFRKGAEGLAALVKAEMGADPFSGTIYVFRAKRADRIKLVFWDGSGVCLVSKRLEDGEFHWPRMQDGAMRLTA
AQFSALFEGLDWKRVHAPIEARVPEKAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aec52 AAW51735.1 Aec52 Not tested AGI-3 Protein 3e-17 50
unnamed ADD91739.1 hypothetical protein Not tested PAI-I AL862 Protein 3e-17 50
pB171ORF50 CAD66190.1 ORF50 protein of pB171 Not tested PAI III 536 Protein 8e-17 49
BCAM0247 YP_002232879.1 putative transposase Not tested BcenGI11 Protein 2e-19 45
unnamed AAL08461.1 unknown Not tested SRL Protein 7e-16 45
Z4336 NP_289561.1 hypothetical protein Not tested OI-122 Protein 6e-16 45
unnamed AAC31493.1 L0014 Not tested LEE Protein 4e-16 45
Z5097 NP_290248.1 prophage-associated protein Not tested LEE Protein 6e-16 45
hp4 AAC61716.1 Hp4 Not tested PAI I CFT073 Protein 4e-16 45
ECs4546 NP_312573.1 hypothetical protein Not tested LEE Protein 6e-16 45
unnamed AAL99258.1 unknown Not tested LEE Protein 4e-16 45
c3561 NP_755436.1 hypothetical protein Not tested PAI I CFT073 Protein 4e-16 45
unnamed ACU09438.1 IS66 family element orf2 Not tested LEE Protein 4e-16 45
ECUMN_3327 YP_002414007.1 putative transposase ORF2, IS66 family Not tested Not named Protein 4e-16 45
Z1132 NP_286667.1 hypothetical protein Not tested TAI Protein 8e-16 45
Z1571 NP_287075.1 hypothetical protein Not tested TAI Protein 8e-16 45
c3578 NP_755453.1 hypothetical protein Not tested PAI I CFT073 Protein 6e-16 45
ECO103_3553 YP_003223420.1 hypothetical protein Not tested LEE Protein 4e-14 44
Z4316 NP_289542.1 hypothetical protein Not tested OI-122 Protein 4e-14 44
unnamed ABR13518.1 transposase Not tested PAGI-7 Protein 2e-10 41
EXB18 ABD94704.1 ISPpu14 transposase Orf2 Not tested ExoU island B Protein 3e-10 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
USDA257_c20740 YP_006397413.1 hypothetical protein VFG1665 Protein 3e-17 49
USDA257_c20740 YP_006397413.1 hypothetical protein VFG0792 Protein 2e-16 45
USDA257_c20740 YP_006397413.1 hypothetical protein VFG1698 Protein 1e-16 45
USDA257_c20740 YP_006397413.1 hypothetical protein VFG1052 Protein 3e-16 45
USDA257_c20740 YP_006397413.1 hypothetical protein VFG1709 Protein 2e-16 45