Gene Information

Name : copR2 (USDA257_c20610)
Accession : YP_006397401.1
Strain : Sinorhizobium fredii USDA 257
Genome accession: NC_018000
Putative virulence/resistance : Virulence
Product : transcriptional activator protein CopR
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2160151 - 2160828 bp
Length : 678 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCATCCTCGTCGTTGAGGACGACCAAAAGACATCGGGGTACATTTCCAGGGGGCTTTCCGAAGCGGGCCATGTTTG
CGACCTCATCGAGGACGGTCGTGACGCCCTTTTTCAGGCTAGCCGTGAGCCGTACGACGTGATGATCGTGGACCGCATGC
TTCCGGGTCTGGACGGGCTTTCCCTCGTAAAAGTGGTCCGCGCCGCGAAAGTGAAAACTCCCGTGTTGTTTCTGACAGCG
GTCGGTGGCGTCGACGACCGGGTCGAGGGACTTGAGGCGGGCGGCGACGATTACCTGACAAAGCCATTCGCCTTTTCGGA
ACTGCTCGCCCGTGTCAACGCTCTTTCCCGGCGCCCTCCTGCGCAGGACCAGAAAACGGTACTTCGCTTTGCCGATCTCG
AGATGGACATCGTCAAGCGTCAGGTTACTCGCCGAGGACAGCTAATCGACCTGCAGCCGCGGGAATTCACGTTGCTCGAA
GTCCTGATGCGCGCGGAAGGGAGGGTGCTGACGCGAACGATGCTTCTCGAACGCGTGTGGGATTTCCACTTCGACCCTAA
GACCAGCGTCGTCGAAACTCATATCAGCCGGCTAAGAGCCAAGATCGACAAACCATTTGACGCGCCGCTGCTCCACACCG
TGCGCAATACCGGGTATCGCCTTGATGCACGCCGCTAG

Protein sequence : 
MRILVVEDDQKTSGYISRGLSEAGHVCDLIEDGRDALFQASREPYDVMIVDRMLPGLDGLSLVKVVRAAKVKTPVLFLTA
VGGVDDRVEGLEAGGDDYLTKPFAFSELLARVNALSRRPPAQDQKTVLRFADLEMDIVKRQVTRRGQLIDLQPREFTLLE
VLMRAEGRVLTRTMLLERVWDFHFDPKTSVVETHISRLRAKIDKPFDAPLLHTVRNTGYRLDARR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-44 48
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-43 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR2 YP_006397401.1 transcriptional activator protein CopR BAC0083 Protein 5e-53 52
copR2 YP_006397401.1 transcriptional activator protein CopR BAC0638 Protein 1e-46 52
copR2 YP_006397401.1 transcriptional activator protein CopR BAC0125 Protein 3e-51 51
copR2 YP_006397401.1 transcriptional activator protein CopR BAC0197 Protein 8e-53 51
copR2 YP_006397401.1 transcriptional activator protein CopR BAC0308 Protein 7e-50 48
copR2 YP_006397401.1 transcriptional activator protein CopR BAC0111 Protein 2e-51 47
copR2 YP_006397401.1 transcriptional activator protein CopR BAC0347 Protein 4e-45 46
copR2 YP_006397401.1 transcriptional activator protein CopR HE999704.1.gene1528. Protein 8e-32 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR2 YP_006397401.1 transcriptional activator protein CopR VFG0596 Protein 1e-44 48
copR2 YP_006397401.1 transcriptional activator protein CopR VFG1390 Protein 7e-40 44
copR2 YP_006397401.1 transcriptional activator protein CopR VFG1389 Protein 1e-31 43